Strain Fitness in Agrobacterium fabrum C58 around Atu0917

Experiment: anthranilamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0916 and Atu0917 are separated by 302 nucleotidesAtu0917 and Atu0918 overlap by 8 nucleotidesAtu0918 and Atu0919 are separated by 21 nucleotides Atu0916: Atu0916 - transcriptional regulator, at 905,301 to 905,729 Atu0916 Atu0917: Atu0917 - hypothetical protein, at 906,032 to 906,454 Atu0917 Atu0918: Atu0918 - hypothetical protein, at 906,447 to 907,283 Atu0918 Atu0919: Atu0919 - hypothetical protein, at 907,305 to 907,721 Atu0919 Position (kb) 906 907Strain fitness (log2 ratio) -1 0 1at 905.221 kb on + strandat 905.433 kb on + strand, within Atu0916at 905.772 kb on + strandat 905.788 kb on - strandat 906.142 kb on + strand, within Atu0917at 906.254 kb on + strand, within Atu0917at 906.270 kb on - strand, within Atu0917at 906.324 kb on - strand, within Atu0917at 906.324 kb on - strand, within Atu0917at 906.351 kb on + strand, within Atu0917at 906.383 kb on - strand, within Atu0917at 906.385 kb on + strand, within Atu0917at 906.393 kb on - strand, within Atu0917at 906.403 kb on - strand, within Atu0917at 906.711 kb on - strand, within Atu0918at 906.742 kb on + strand, within Atu0918at 906.747 kb on + strand, within Atu0918at 906.750 kb on - strand, within Atu0918at 906.800 kb on + strand, within Atu0918at 906.800 kb on + strand, within Atu0918at 906.808 kb on - strand, within Atu0918at 906.832 kb on + strand, within Atu0918at 906.999 kb on - strand, within Atu0918at 906.999 kb on - strand, within Atu0918at 907.001 kb on + strand, within Atu0918at 907.004 kb on - strand, within Atu0918at 907.004 kb on - strand, within Atu0918at 907.083 kb on + strand, within Atu0918at 907.173 kb on - strand, within Atu0918at 907.175 kb on + strand, within Atu0918at 907.175 kb on + strand, within Atu0918at 907.220 kb on + strandat 907.220 kb on + strandat 907.228 kb on - strandat 907.228 kb on - strandat 907.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anthranilamide (C)
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905,221 + -0.8
905,433 + Atu0916 0.31 -0.8
905,772 + +0.4
905,788 - -0.0
906,142 + Atu0917 0.26 -0.3
906,254 + Atu0917 0.52 +1.5
906,270 - Atu0917 0.56 +1.0
906,324 - Atu0917 0.69 -0.3
906,324 - Atu0917 0.69 -0.3
906,351 + Atu0917 0.75 +0.9
906,383 - Atu0917 0.83 +0.6
906,385 + Atu0917 0.83 +0.6
906,393 - Atu0917 0.85 +0.7
906,403 - Atu0917 0.88 -0.1
906,711 - Atu0918 0.32 -0.2
906,742 + Atu0918 0.35 +0.3
906,747 + Atu0918 0.36 -0.4
906,750 - Atu0918 0.36 +0.2
906,800 + Atu0918 0.42 +0.1
906,800 + Atu0918 0.42 -0.4
906,808 - Atu0918 0.43 -0.2
906,832 + Atu0918 0.46 -0.5
906,999 - Atu0918 0.66 +1.7
906,999 - Atu0918 0.66 -0.2
907,001 + Atu0918 0.66 +0.8
907,004 - Atu0918 0.67 -0.8
907,004 - Atu0918 0.67 -0.1
907,083 + Atu0918 0.76 -0.3
907,173 - Atu0918 0.87 +0.2
907,175 + Atu0918 0.87 -0.3
907,175 + Atu0918 0.87 -0.0
907,220 + +0.5
907,220 + +0.2
907,228 - +0.2
907,228 - -1.1
907,239 - -0.1

Or see this region's nucleotide sequence