Strain Fitness in Escherichia coli BW25113 around b3570

Experiment: LB Anaerobic with Ampicillin 0.00000195313 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxylR and bax are separated by 195 nucleotidesbax and malS are separated by 319 nucleotides b3569: xylR - DNA-binding transcriptional activator, xylose-binding (NCBI), at 3,733,002 to 3,734,180 xylR b3570: bax - hypothetical protein (NCBI), at 3,734,376 to 3,735,200 bax b3571: malS - periplasmic alpha-amylase precursor (NCBI), at 3,735,520 to 3,737,550 malS Position (kb) 3734 3735 3736Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3733.380 kb on + strand, within xylRat 3733.380 kb on + strand, within xylRat 3733.392 kb on + strand, within xylRat 3733.421 kb on - strand, within xylRat 3733.488 kb on + strand, within xylRat 3733.685 kb on - strand, within xylRat 3733.697 kb on + strand, within xylRat 3733.697 kb on + strand, within xylRat 3733.764 kb on - strand, within xylRat 3733.823 kb on + strand, within xylRat 3733.831 kb on - strand, within xylRat 3733.831 kb on - strand, within xylRat 3733.836 kb on - strand, within xylRat 3733.863 kb on + strand, within xylRat 3733.900 kb on - strand, within xylRat 3733.937 kb on + strand, within xylRat 3733.937 kb on + strand, within xylRat 3733.963 kb on + strand, within xylRat 3734.000 kb on + strand, within xylRat 3734.003 kb on - strand, within xylRat 3734.003 kb on - strand, within xylRat 3734.024 kb on + strand, within xylRat 3734.051 kb on + strand, within xylRat 3734.060 kb on - strand, within xylRat 3734.070 kb on + strandat 3734.094 kb on - strandat 3734.137 kb on + strandat 3734.137 kb on + strandat 3734.156 kb on + strandat 3734.171 kb on - strandat 3734.182 kb on - strandat 3734.244 kb on - strandat 3734.244 kb on - strandat 3734.297 kb on + strandat 3734.297 kb on + strandat 3734.321 kb on - strandat 3734.350 kb on + strandat 3734.353 kb on + strandat 3734.367 kb on - strandat 3734.368 kb on - strandat 3734.415 kb on - strandat 3734.415 kb on - strandat 3734.415 kb on - strandat 3734.415 kb on - strandat 3734.415 kb on - strandat 3734.491 kb on + strand, within baxat 3734.491 kb on - strand, within baxat 3734.495 kb on + strand, within baxat 3734.522 kb on + strand, within baxat 3734.607 kb on - strand, within baxat 3734.704 kb on - strand, within baxat 3734.713 kb on - strand, within baxat 3734.723 kb on - strand, within baxat 3734.723 kb on - strand, within baxat 3734.762 kb on - strandat 3734.766 kb on - strand, within baxat 3734.800 kb on - strand, within baxat 3734.803 kb on + strand, within baxat 3734.803 kb on + strand, within baxat 3734.814 kb on + strand, within baxat 3734.829 kb on + strand, within baxat 3734.829 kb on + strand, within baxat 3734.868 kb on + strand, within baxat 3734.909 kb on + strand, within baxat 3734.914 kb on + strand, within baxat 3734.945 kb on + strand, within baxat 3734.945 kb on + strand, within baxat 3734.945 kb on + strand, within baxat 3734.945 kb on + strand, within baxat 3734.976 kb on - strand, within baxat 3735.031 kb on - strand, within baxat 3735.064 kb on - strand, within baxat 3735.101 kb on + strand, within baxat 3735.101 kb on + strand, within baxat 3735.101 kb on + strand, within baxat 3735.101 kb on + strand, within baxat 3735.109 kb on - strand, within baxat 3735.115 kb on - strand, within baxat 3735.117 kb on - strand, within baxat 3735.117 kb on - strand, within baxat 3735.134 kb on - strandat 3735.226 kb on + strandat 3735.226 kb on + strandat 3735.297 kb on - strandat 3735.297 kb on - strandat 3735.441 kb on - strandat 3735.518 kb on - strandat 3735.518 kb on - strandat 3735.547 kb on + strandat 3735.547 kb on + strandat 3735.559 kb on - strandat 3735.754 kb on - strand, within malSat 3735.754 kb on - strand, within malSat 3735.818 kb on + strand, within malSat 3735.824 kb on + strand, within malSat 3735.824 kb on + strand, within malSat 3735.861 kb on + strand, within malSat 3735.873 kb on - strand, within malSat 3735.908 kb on + strand, within malSat 3735.987 kb on - strand, within malSat 3736.094 kb on + strand, within malSat 3736.151 kb on - strand, within malS

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Ampicillin 0.00000195313 mM
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3,733,380 + xylR b3569 0.32 -0.5
3,733,380 + xylR b3569 0.32 +0.4
3,733,392 + xylR b3569 0.33 -0.8
3,733,421 - xylR b3569 0.36 +0.3
3,733,488 + xylR b3569 0.41 -0.2
3,733,685 - xylR b3569 0.58 -0.7
3,733,697 + xylR b3569 0.59 -0.4
3,733,697 + xylR b3569 0.59 +0.2
3,733,764 - xylR b3569 0.65 +0.1
3,733,823 + xylR b3569 0.70 +0.5
3,733,831 - xylR b3569 0.70 -1.3
3,733,831 - xylR b3569 0.70 -0.1
3,733,836 - xylR b3569 0.71 -0.3
3,733,863 + xylR b3569 0.73 -0.5
3,733,900 - xylR b3569 0.76 -1.4
3,733,937 + xylR b3569 0.79 -0.4
3,733,937 + xylR b3569 0.79 -0.9
3,733,963 + xylR b3569 0.82 -0.5
3,734,000 + xylR b3569 0.85 +0.4
3,734,003 - xylR b3569 0.85 -1.2
3,734,003 - xylR b3569 0.85 +1.1
3,734,024 + xylR b3569 0.87 -0.9
3,734,051 + xylR b3569 0.89 +0.9
3,734,060 - xylR b3569 0.90 -1.0
3,734,070 + -0.6
3,734,094 - -0.1
3,734,137 + +1.2
3,734,137 + +1.7
3,734,156 + -0.5
3,734,171 - -0.5
3,734,182 - -0.7
3,734,244 - -1.5
3,734,244 - -0.4
3,734,297 + -0.5
3,734,297 + -0.2
3,734,321 - +0.2
3,734,350 + +2.1
3,734,353 + -0.6
3,734,367 - -0.5
3,734,368 - -0.3
3,734,415 - -1.2
3,734,415 - -0.7
3,734,415 - -0.7
3,734,415 - +1.3
3,734,415 - -0.3
3,734,491 + bax b3570 0.14 -0.4
3,734,491 - bax b3570 0.14 -1.4
3,734,495 + bax b3570 0.14 -1.1
3,734,522 + bax b3570 0.18 -0.7
3,734,607 - bax b3570 0.28 -1.5
3,734,704 - bax b3570 0.40 -0.2
3,734,713 - bax b3570 0.41 -0.6
3,734,723 - bax b3570 0.42 -1.2
3,734,723 - bax b3570 0.42 -1.7
3,734,762 - -0.1
3,734,766 - bax b3570 0.47 -1.6
3,734,800 - bax b3570 0.51 +0.1
3,734,803 + bax b3570 0.52 +0.9
3,734,803 + bax b3570 0.52 -0.2
3,734,814 + bax b3570 0.53 -1.4
3,734,829 + bax b3570 0.55 -0.8
3,734,829 + bax b3570 0.55 -2.2
3,734,868 + bax b3570 0.60 -0.3
3,734,909 + bax b3570 0.65 +0.2
3,734,914 + bax b3570 0.65 -0.9
3,734,945 + bax b3570 0.69 -0.6
3,734,945 + bax b3570 0.69 -1.6
3,734,945 + bax b3570 0.69 -0.9
3,734,945 + bax b3570 0.69 -0.6
3,734,976 - bax b3570 0.73 -1.9
3,735,031 - bax b3570 0.79 -1.7
3,735,064 - bax b3570 0.83 -1.9
3,735,101 + bax b3570 0.88 -0.6
3,735,101 + bax b3570 0.88 -1.3
3,735,101 + bax b3570 0.88 -1.4
3,735,101 + bax b3570 0.88 -0.4
3,735,109 - bax b3570 0.89 -0.1
3,735,115 - bax b3570 0.90 +0.9
3,735,117 - bax b3570 0.90 +0.3
3,735,117 - bax b3570 0.90 -0.1
3,735,134 - +0.2
3,735,226 + -0.2
3,735,226 + -0.3
3,735,297 - +0.1
3,735,297 - -1.1
3,735,441 - +2.2
3,735,518 - -0.1
3,735,518 - +0.2
3,735,547 + -0.2
3,735,547 + +0.5
3,735,559 - -1.1
3,735,754 - malS b3571 0.12 -1.3
3,735,754 - malS b3571 0.12 +1.3
3,735,818 + malS b3571 0.15 +3.1
3,735,824 + malS b3571 0.15 -0.1
3,735,824 + malS b3571 0.15 +1.0
3,735,861 + malS b3571 0.17 +0.1
3,735,873 - malS b3571 0.17 +0.1
3,735,908 + malS b3571 0.19 +0.2
3,735,987 - malS b3571 0.23 +1.1
3,736,094 + malS b3571 0.28 +0.3
3,736,151 - malS b3571 0.31 -0.4

Or see this region's nucleotide sequence