Strain Fitness in Escherichia coli BW25113 around b2626
Experiment: LB Anaerobic with Penicillin g 0.0000625 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB Anaerobic with Penicillin g 0.0000625 mM |
---|---|---|---|---|---|
remove | |||||
2,757,575 | + | yfjI | b2625 | 0.40 | +1.8 |
2,757,776 | + | yfjI | b2625 | 0.55 | +1.8 |
2,757,780 | + | yfjI | b2625 | 0.55 | +1.8 |
2,757,791 | + | yfjI | b2625 | 0.56 | +1.0 |
2,757,791 | + | yfjI | b2625 | 0.56 | +1.8 |
2,757,791 | + | yfjI | b2625 | 0.56 | +1.8 |
2,757,838 | + | yfjI | b2625 | 0.59 | +1.8 |
2,757,838 | + | yfjI | b2625 | 0.59 | +1.8 |
2,758,060 | + | yfjI | b2625 | 0.75 | +1.8 |
2,758,060 | + | yfjI | b2625 | 0.75 | +1.8 |
2,758,565 | + | +1.8 | |||
2,758,599 | + | +1.8 | |||
2,758,650 | - | yfjJ | b2626 | 0.13 | +1.8 |
2,758,742 | + | yfjJ | b2626 | 0.28 | +1.8 |
2,758,744 | - | yfjJ | b2626 | 0.28 | +1.8 |
2,758,744 | - | yfjJ | b2626 | 0.28 | +1.8 |
2,758,760 | + | yfjJ | b2626 | 0.30 | +1.8 |
2,758,784 | + | yfjJ | b2626 | 0.34 | +1.8 |
2,758,820 | + | yfjJ | b2626 | 0.40 | +1.8 |
2,758,828 | + | yfjJ | b2626 | 0.41 | +0.8 |
2,758,900 | - | yfjJ | b2626 | 0.53 | +1.8 |
2,758,934 | - | yfjJ | b2626 | 0.58 | +1.8 |
2,758,973 | - | yfjJ | b2626 | 0.64 | +0.8 |
2,758,987 | - | yfjJ | b2626 | 0.67 | +1.2 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -0.5 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -0.9 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -1.1 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -1.4 |
2,758,989 | + | yfjJ | b2626 | 0.67 | +0.8 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -0.5 |
2,758,989 | + | yfjJ | b2626 | 0.67 | +1.4 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -0.8 |
2,758,989 | + | yfjJ | b2626 | 0.67 | -0.8 |
2,758,994 | + | yfjJ | b2626 | 0.68 | +0.4 |
2,758,996 | + | yfjJ | b2626 | 0.68 | -0.2 |
2,758,996 | + | yfjJ | b2626 | 0.68 | -0.0 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +1.8 |
2,758,997 | - | yfjJ | b2626 | 0.68 | -0.2 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +0.8 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +1.8 |
2,758,997 | - | yfjJ | b2626 | 0.68 | -0.9 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +0.8 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +0.8 |
2,758,997 | - | yfjJ | b2626 | 0.68 | -0.2 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +1.8 |
2,758,997 | - | yfjJ | b2626 | 0.68 | +0.2 |
2,758,999 | + | yfjJ | b2626 | 0.69 | -0.5 |
2,758,999 | - | yfjJ | b2626 | 0.69 | -0.2 |
2,759,002 | - | yfjJ | b2626 | 0.69 | +1.8 |
2,759,005 | - | yfjJ | b2626 | 0.70 | +1.8 |
2,759,007 | - | yfjJ | b2626 | 0.70 | -1.0 |
2,759,007 | - | yfjJ | b2626 | 0.70 | -0.4 |
2,759,007 | - | yfjJ | b2626 | 0.70 | +0.8 |
2,759,010 | - | yfjJ | b2626 | 0.70 | +0.8 |
2,759,010 | - | yfjJ | b2626 | 0.70 | +1.8 |
2,759,011 | + | yfjJ | b2626 | 0.70 | -0.8 |
2,759,013 | + | yfjJ | b2626 | 0.71 | -1.2 |
2,759,013 | + | yfjJ | b2626 | 0.71 | -1.7 |
2,759,013 | + | yfjJ | b2626 | 0.71 | -0.4 |
2,759,013 | + | yfjJ | b2626 | 0.71 | -0.4 |
2,759,013 | + | yfjJ | b2626 | 0.71 | -0.2 |
2,759,019 | - | yfjJ | b2626 | 0.72 | +0.8 |
2,759,019 | - | yfjJ | b2626 | 0.72 | -0.1 |
2,759,021 | - | yfjJ | b2626 | 0.72 | +1.8 |
2,759,021 | - | yfjJ | b2626 | 0.72 | +0.8 |
2,759,021 | - | yfjJ | b2626 | 0.72 | +0.2 |
2,759,021 | - | yfjJ | b2626 | 0.72 | +0.8 |
2,759,021 | - | yfjJ | b2626 | 0.72 | +0.8 |
2,759,021 | - | yfjJ | b2626 | 0.72 | +1.8 |
2,759,021 | - | yfjJ | b2626 | 0.72 | -0.8 |
2,759,079 | - | yfjJ | b2626 | 0.81 | +0.2 |
2,759,081 | + | yfjJ | b2626 | 0.82 | +1.8 |
2,759,081 | + | yfjJ | b2626 | 0.82 | -1.4 |
2,759,094 | - | yfjJ | b2626 | 0.84 | +1.8 |
2,759,096 | + | yfjJ | b2626 | 0.84 | -0.8 |
2,759,096 | + | yfjJ | b2626 | 0.84 | -1.0 |
2,759,096 | + | yfjJ | b2626 | 0.84 | +0.6 |
2,759,096 | + | yfjJ | b2626 | 0.84 | -0.1 |
2,759,096 | + | yfjJ | b2626 | 0.84 | -0.1 |
2,759,096 | + | yfjJ | b2626 | 0.84 | +1.6 |
2,759,114 | + | yfjJ | b2626 | 0.87 | -1.0 |
2,759,138 | + | -1.7 | |||
2,759,138 | + | +1.6 | |||
2,759,149 | + | -0.9 | |||
2,759,176 | - | +0.8 | |||
2,759,176 | - | +0.8 | |||
2,759,228 | - | +1.8 | |||
2,759,238 | - | +1.8 | |||
2,759,243 | - | -0.2 | |||
2,759,286 | - | +0.5 | |||
2,759,286 | - | -0.7 | |||
2,759,296 | - | -0.8 | |||
2,759,296 | - | +0.2 | |||
2,759,296 | - | +0.3 | |||
2,759,296 | - | -0.5 | |||
2,759,296 | - | -1.4 | |||
2,759,299 | - | +0.7 | |||
2,759,299 | - | -0.7 | |||
2,759,299 | - | -0.1 | |||
2,759,324 | - | +0.3 | |||
2,759,324 | - | -0.3 | |||
2,759,389 | - | -0.7 | |||
2,759,408 | - | +0.5 | |||
2,759,411 | + | -0.8 | |||
2,759,420 | - | +1.3 | |||
2,759,422 | - | +0.3 | |||
2,759,426 | - | +0.8 | |||
2,759,426 | - | +0.5 | |||
2,759,434 | - | +0.3 | |||
2,759,434 | - | -0.2 | |||
2,759,444 | - | -0.2 | |||
2,759,455 | - | +1.2 | |||
2,759,474 | + | +2.4 | |||
2,759,477 | - | -0.9 | |||
2,759,546 | - | +0.8 | |||
2,759,552 | + | +0.4 | |||
2,759,552 | + | -0.5 | |||
2,759,581 | - | -0.0 | |||
2,759,630 | + | yfjK | b2627 | 0.12 | -1.5 |
2,759,636 | - | yfjK | b2627 | 0.12 | +1.8 |
2,759,636 | - | yfjK | b2627 | 0.12 | -0.2 |
2,759,636 | - | yfjK | b2627 | 0.12 | -0.3 |
2,759,654 | + | yfjK | b2627 | 0.13 | +0.9 |
2,759,657 | - | yfjK | b2627 | 0.13 | -1.5 |
2,759,657 | - | yfjK | b2627 | 0.13 | -0.3 |
2,759,662 | - | yfjK | b2627 | 0.13 | -0.4 |
2,759,701 | - | yfjK | b2627 | 0.15 | +0.4 |
2,759,707 | + | yfjK | b2627 | 0.15 | -0.2 |
2,759,707 | + | +0.8 | |||
2,759,715 | - | yfjK | b2627 | 0.16 | +0.5 |
2,759,733 | + | yfjK | b2627 | 0.16 | -0.8 |
2,759,733 | + | yfjK | b2627 | 0.16 | +0.0 |
2,759,849 | - | yfjK | b2627 | 0.22 | +0.0 |
2,759,872 | - | yfjK | b2627 | 0.23 | +1.0 |
2,760,022 | + | yfjK | b2627 | 0.30 | -0.0 |
2,760,168 | + | yfjK | b2627 | 0.36 | -0.3 |
2,760,184 | - | yfjK | b2627 | 0.37 | -0.3 |
Or see this region's nucleotide sequence