Strain Fitness in Escherichia coli BW25113 around b2187

Experiment: LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyejK and yejL are separated by 181 nucleotidesyejL and yejM are separated by 19 nucleotides b2186: yejK - nucleoid-associated protein NdpA (NCBI), at 2,280,962 to 2,281,969 yejK b2187: yejL - hypothetical protein (NCBI), at 2,282,151 to 2,282,378 yejL b2188: yejM - predicted hydrolase, inner membrane (NCBI), at 2,282,398 to 2,284,158 yejM Position (kb) 2282 2283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2281.166 kb on - strand, within yejKat 2281.166 kb on - strand, within yejKat 2281.253 kb on + strand, within yejKat 2281.255 kb on + strand, within yejKat 2281.263 kb on + strand, within yejKat 2281.263 kb on + strand, within yejKat 2281.284 kb on - strand, within yejKat 2281.284 kb on - strand, within yejKat 2281.286 kb on + strand, within yejKat 2281.294 kb on - strand, within yejKat 2281.323 kb on - strand, within yejKat 2281.325 kb on + strand, within yejKat 2281.347 kb on + strand, within yejKat 2281.377 kb on - strand, within yejKat 2281.447 kb on + strand, within yejKat 2281.456 kb on - strand, within yejKat 2281.483 kb on + strand, within yejKat 2281.512 kb on - strand, within yejKat 2281.512 kb on - strand, within yejKat 2281.780 kb on - strand, within yejKat 2281.887 kb on + strandat 2281.905 kb on - strandat 2282.004 kb on - strandat 2282.026 kb on + strandat 2282.026 kb on + strandat 2282.256 kb on + strand, within yejLat 2282.304 kb on + strand, within yejLat 2283.015 kb on + strand, within yejMat 2283.060 kb on + strand, within yejMat 2283.103 kb on - strand, within yejMat 2283.140 kb on - strand, within yejMat 2283.162 kb on + strand, within yejMat 2283.194 kb on - strand, within yejMat 2283.202 kb on + strand, within yejMat 2283.202 kb on + strand, within yejMat 2283.223 kb on + strand, within yejMat 2283.223 kb on + strand, within yejMat 2283.226 kb on + strand, within yejMat 2283.279 kb on + strand, within yejMat 2283.304 kb on - strand, within yejMat 2283.324 kb on + strand, within yejMat 2283.324 kb on + strand, within yejM

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
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2,281,166 - yejK b2186 0.20 -1.2
2,281,166 - yejK b2186 0.20 -1.1
2,281,253 + yejK b2186 0.29 +0.9
2,281,255 + yejK b2186 0.29 -0.2
2,281,263 + yejK b2186 0.30 +1.2
2,281,263 + yejK b2186 0.30 -0.0
2,281,284 - yejK b2186 0.32 -0.2
2,281,284 - yejK b2186 0.32 -1.5
2,281,286 + yejK b2186 0.32 -1.4
2,281,294 - yejK b2186 0.33 -1.0
2,281,323 - yejK b2186 0.36 -0.6
2,281,325 + yejK b2186 0.36 -0.1
2,281,347 + yejK b2186 0.38 -1.6
2,281,377 - yejK b2186 0.41 -0.7
2,281,447 + yejK b2186 0.48 -0.7
2,281,456 - yejK b2186 0.49 -1.3
2,281,483 + yejK b2186 0.52 -0.3
2,281,512 - yejK b2186 0.55 -2.6
2,281,512 - yejK b2186 0.55 -1.2
2,281,780 - yejK b2186 0.81 -0.6
2,281,887 + +0.9
2,281,905 - +0.1
2,282,004 - -1.3
2,282,026 + +1.9
2,282,026 + +0.3
2,282,256 + yejL b2187 0.46 +0.5
2,282,304 + yejL b2187 0.67 +1.8
2,283,015 + yejM b2188 0.35 +1.9
2,283,060 + yejM b2188 0.38 -2.0
2,283,103 - yejM b2188 0.40 +0.3
2,283,140 - yejM b2188 0.42 -1.5
2,283,162 + yejM b2188 0.43 -2.4
2,283,194 - yejM b2188 0.45 +0.3
2,283,202 + yejM b2188 0.46 -3.1
2,283,202 + yejM b2188 0.46 -2.3
2,283,223 + yejM b2188 0.47 -1.1
2,283,223 + yejM b2188 0.47 -1.7
2,283,226 + yejM b2188 0.47 -2.2
2,283,279 + yejM b2188 0.50 -3.2
2,283,304 - yejM b2188 0.51 -2.5
2,283,324 + yejM b2188 0.53 -1.8
2,283,324 + yejM b2188 0.53 -4.2

Or see this region's nucleotide sequence