Experiment: LB Anaerobic with Nalidixic 0.00000195313 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejF and yejG are separated by 3 nucleotides yejG and bcr are separated by 332 nucleotides
b2180: yejF - fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components (NCBI), at 2,274,322 to 2,275,911
yejF
b2181: yejG - hypothetical protein (NCBI), at 2,275,915 to 2,276,259
yejG
b2182: bcr - bicyclomycin/multidrug efflux system (NCBI), at 2,276,592 to 2,277,782
bcr
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-2
-1
0
1 at 2275.066 kb on + strand, within yejF at 2275.071 kb on + strand, within yejF at 2275.079 kb on - strand, within yejF at 2275.089 kb on + strand, within yejF at 2275.112 kb on + strand, within yejF at 2275.120 kb on - strand, within yejF at 2275.201 kb on - strand, within yejF at 2275.219 kb on - strand, within yejF at 2275.389 kb on + strand, within yejF at 2275.455 kb on + strand, within yejF at 2275.455 kb on + strand, within yejF at 2275.455 kb on + strand, within yejF at 2275.455 kb on + strand, within yejF at 2275.499 kb on + strand, within yejF at 2275.526 kb on + strand, within yejF at 2275.673 kb on + strand, within yejF at 2275.814 kb on - strand at 2275.816 kb on - strand at 2275.870 kb on + strand at 2275.870 kb on + strand at 2276.009 kb on + strand, within yejG at 2276.027 kb on - strand, within yejG at 2276.032 kb on + strand, within yejG at 2276.032 kb on + strand, within yejG at 2276.032 kb on + strand, within yejG at 2276.032 kb on - strand, within yejG at 2276.078 kb on + strand, within yejG at 2276.099 kb on + strand, within yejG at 2276.108 kb on - strand, within yejG at 2276.245 kb on - strand at 2276.332 kb on + strand at 2276.374 kb on + strand at 2276.406 kb on - strand at 2276.411 kb on - strand at 2276.411 kb on - strand at 2276.429 kb on - strand at 2276.885 kb on - strand, within bcr at 2276.892 kb on - strand, within bcr at 2276.892 kb on - strand, within bcr at 2276.950 kb on - strand, within bcr at 2276.950 kb on - strand, within bcr at 2277.132 kb on + strand, within bcr at 2277.137 kb on + strand, within bcr at 2277.197 kb on + strand, within bcr
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Nalidixic 0.00000195313 mM remove 2,275,066 + yejF b2180 0.47 +0.6 2,275,071 + yejF b2180 0.47 -0.4 2,275,079 - yejF b2180 0.48 +0.0 2,275,089 + yejF b2180 0.48 +0.7 2,275,112 + yejF b2180 0.50 +0.2 2,275,120 - yejF b2180 0.50 -0.3 2,275,201 - yejF b2180 0.55 +0.1 2,275,219 - yejF b2180 0.56 -0.2 2,275,389 + yejF b2180 0.67 +0.1 2,275,455 + yejF b2180 0.71 +0.4 2,275,455 + yejF b2180 0.71 -0.4 2,275,455 + yejF b2180 0.71 -0.1 2,275,455 + yejF b2180 0.71 +0.1 2,275,499 + yejF b2180 0.74 -0.8 2,275,526 + yejF b2180 0.76 -0.8 2,275,673 + yejF b2180 0.85 -0.5 2,275,814 - +0.8 2,275,816 - -0.2 2,275,870 + +0.7 2,275,870 + -0.3 2,276,009 + yejG b2181 0.27 -1.0 2,276,027 - yejG b2181 0.32 -0.6 2,276,032 + yejG b2181 0.34 -1.4 2,276,032 + yejG b2181 0.34 -0.8 2,276,032 + yejG b2181 0.34 -0.1 2,276,032 - yejG b2181 0.34 -0.5 2,276,078 + yejG b2181 0.47 -0.5 2,276,099 + yejG b2181 0.53 -1.9 2,276,108 - yejG b2181 0.56 -0.3 2,276,245 - +1.5 2,276,332 + -0.1 2,276,374 + -0.3 2,276,406 - -0.8 2,276,411 - +0.3 2,276,411 - -0.5 2,276,429 - -0.5 2,276,885 - bcr b2182 0.25 +0.1 2,276,892 - bcr b2182 0.25 -0.1 2,276,892 - bcr b2182 0.25 -1.3 2,276,950 - bcr b2182 0.30 +0.5 2,276,950 - bcr b2182 0.30 -2.7 2,277,132 + bcr b2182 0.45 +0.6 2,277,137 + bcr b2182 0.46 +0.2 2,277,197 + bcr b2182 0.51 -0.0
Or see this region's nucleotide sequence