Strain Fitness in Escherichia coli BW25113 around b2785

Experiment: LB Anaerobic with Azlocillin 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrelA and rumA are separated by 47 nucleotidesrumA and barA are separated by 56 nucleotides b2784: relA - (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI), at 2,909,439 to 2,911,673 relA b2785: rumA - 23S rRNA (uracil-5-)-methyltransferase (NCBI), at 2,911,721 to 2,913,022 rumA b2786: barA - hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI), at 2,913,079 to 2,915,835 barA Position (kb) 2911 2912 2913 2914Strain fitness (log2 ratio) -2 -1 0 1 2at 2910.721 kb on - strand, within relAat 2910.721 kb on - strand, within relAat 2910.721 kb on - strand, within relAat 2910.788 kb on - strand, within relAat 2910.788 kb on - strand, within relAat 2910.788 kb on - strand, within relAat 2910.895 kb on - strand, within relAat 2910.895 kb on - strand, within relAat 2910.898 kb on + strand, within relAat 2910.898 kb on + strand, within relAat 2910.921 kb on + strand, within relAat 2910.921 kb on + strand, within relAat 2910.985 kb on + strand, within relAat 2911.020 kb on - strand, within relAat 2911.134 kb on - strand, within relAat 2911.196 kb on + strand, within relAat 2911.201 kb on + strand, within relAat 2911.201 kb on + strand, within relAat 2911.283 kb on + strand, within relAat 2911.283 kb on + strand, within relAat 2911.283 kb on + strand, within relAat 2911.297 kb on + strand, within relAat 2911.300 kb on - strand, within relAat 2911.301 kb on - strand, within relAat 2911.301 kb on - strand, within relAat 2911.331 kb on + strand, within relAat 2911.331 kb on + strand, within relAat 2911.360 kb on - strand, within relAat 2911.456 kb on - strandat 2911.488 kb on - strandat 2911.525 kb on + strandat 2911.525 kb on + strandat 2911.568 kb on - strandat 2911.568 kb on - strandat 2911.572 kb on + strandat 2911.572 kb on + strandat 2911.598 kb on + strandat 2911.690 kb on - strandat 2911.795 kb on - strandat 2911.851 kb on + strandat 2911.851 kb on + strandat 2911.854 kb on + strand, within rumAat 2911.859 kb on + strand, within rumAat 2911.860 kb on - strand, within rumAat 2911.861 kb on - strand, within rumAat 2911.870 kb on + strand, within rumAat 2911.903 kb on + strand, within rumAat 2911.931 kb on - strand, within rumAat 2911.978 kb on - strand, within rumAat 2912.077 kb on + strand, within rumAat 2912.087 kb on + strand, within rumAat 2912.087 kb on + strand, within rumAat 2912.117 kb on - strand, within rumAat 2912.168 kb on + strand, within rumAat 2912.263 kb on + strand, within rumAat 2912.343 kb on - strand, within rumAat 2912.387 kb on + strand, within rumAat 2912.433 kb on + strand, within rumAat 2912.462 kb on + strand, within rumAat 2912.465 kb on - strand, within rumAat 2912.480 kb on + strand, within rumAat 2912.556 kb on + strand, within rumAat 2912.559 kb on + strand, within rumAat 2912.646 kb on + strand, within rumAat 2912.654 kb on - strand, within rumAat 2912.668 kb on + strand, within rumAat 2912.668 kb on + strand, within rumAat 2912.668 kb on + strand, within rumAat 2912.668 kb on + strand, within rumAat 2912.709 kb on + strand, within rumAat 2912.709 kb on + strand, within rumAat 2912.709 kb on - strand, within rumAat 2912.738 kb on + strand, within rumAat 2912.954 kb on - strandat 2912.975 kb on + strandat 2912.975 kb on + strandat 2912.986 kb on + strandat 2913.047 kb on + strandat 2913.094 kb on - strandat 2913.119 kb on + strandat 2913.177 kb on + strandat 2913.177 kb on + strandat 2913.184 kb on + strandat 2913.184 kb on - strandat 2913.213 kb on + strandat 2913.218 kb on + strandat 2913.218 kb on + strandat 2913.218 kb on + strandat 2913.223 kb on + strandat 2913.252 kb on + strandat 2913.257 kb on - strandat 2913.258 kb on + strandat 2913.288 kb on + strandat 2913.288 kb on + strandat 2913.288 kb on + strandat 2913.288 kb on + strandat 2913.294 kb on - strandat 2913.294 kb on - strandat 2913.296 kb on - strandat 2913.298 kb on + strandat 2913.315 kb on + strandat 2913.323 kb on - strandat 2913.323 kb on - strandat 2913.361 kb on + strand, within barAat 2913.361 kb on + strand, within barAat 2913.395 kb on + strand, within barAat 2913.403 kb on + strand, within barAat 2913.403 kb on - strand, within barAat 2913.408 kb on + strand, within barAat 2913.424 kb on - strand, within barAat 2913.428 kb on - strand, within barAat 2913.428 kb on - strand, within barAat 2913.430 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.435 kb on + strand, within barAat 2913.437 kb on + strand, within barAat 2913.439 kb on + strand, within barAat 2913.442 kb on - strand, within barAat 2913.443 kb on - strand, within barAat 2913.448 kb on - strand, within barAat 2913.458 kb on + strand, within barAat 2913.466 kb on - strand, within barAat 2913.468 kb on + strand, within barAat 2913.468 kb on + strand, within barAat 2913.478 kb on - strand, within barAat 2913.478 kb on - strand, within barAat 2913.478 kb on - strand, within barAat 2913.478 kb on - strand, within barAat 2913.490 kb on + strand, within barAat 2913.494 kb on - strand, within barAat 2913.495 kb on + strand, within barAat 2913.498 kb on + strand, within barAat 2913.513 kb on + strand, within barAat 2913.518 kb on + strand, within barAat 2913.518 kb on + strand, within barAat 2913.526 kb on - strand, within barAat 2913.549 kb on + strand, within barAat 2913.580 kb on - strand, within barAat 2913.580 kb on - strand, within barAat 2913.587 kb on + strand, within barAat 2913.594 kb on - strand, within barAat 2913.643 kb on + strand, within barAat 2913.675 kb on - strand, within barAat 2913.675 kb on - strand, within barAat 2913.680 kb on + strand, within barAat 2913.680 kb on + strand, within barAat 2913.682 kb on + strand, within barAat 2913.682 kb on + strand, within barAat 2913.688 kb on - strand, within barAat 2913.688 kb on - strand, within barAat 2913.688 kb on - strand, within barAat 2913.688 kb on - strand, within barAat 2913.702 kb on - strand, within barAat 2913.702 kb on - strand, within barAat 2913.703 kb on + strand, within barAat 2913.703 kb on + strand, within barAat 2913.705 kb on + strand, within barAat 2913.705 kb on + strand, within barAat 2913.713 kb on - strand, within barAat 2913.713 kb on - strand, within barAat 2913.713 kb on - strand, within barAat 2913.720 kb on - strand, within barAat 2913.721 kb on - strand, within barAat 2913.721 kb on - strand, within barAat 2913.739 kb on + strand, within barAat 2913.739 kb on + strand, within barAat 2913.739 kb on + strand, within barAat 2913.744 kb on - strand, within barAat 2913.744 kb on - strand, within barAat 2913.747 kb on - strand, within barAat 2913.747 kb on - strand, within barAat 2913.747 kb on - strand, within barAat 2913.766 kb on - strand, within barAat 2913.782 kb on - strand, within barAat 2913.813 kb on + strand, within barAat 2913.836 kb on - strand, within barAat 2913.836 kb on - strand, within barAat 2913.848 kb on + strand, within barAat 2913.848 kb on + strand, within barAat 2913.848 kb on + strand, within barAat 2913.848 kb on + strand, within barAat 2913.858 kb on + strand, within barAat 2913.858 kb on + strand, within barAat 2913.863 kb on + strand, within barAat 2913.863 kb on + strand, within barAat 2913.910 kb on + strand, within barAat 2913.910 kb on + strand, within barAat 2913.933 kb on + strand, within barAat 2913.933 kb on + strand, within barAat 2913.935 kb on + strand, within barAat 2913.935 kb on + strand, within barAat 2913.983 kb on - strand, within barAat 2913.984 kb on - strand, within barAat 2913.985 kb on + strand, within barAat 2913.987 kb on + strand, within barAat 2913.990 kb on + strand, within barAat 2913.990 kb on + strand, within barAat 2913.990 kb on + strand, within barAat 2913.990 kb on + strand, within barAat 2913.990 kb on + strand, within barAat 2913.990 kb on + strand, within barAat 2913.997 kb on + strand, within barAat 2913.997 kb on - strand, within barAat 2913.998 kb on - strand, within barAat 2913.998 kb on - strand, within barAat 2913.999 kb on + strand, within barAat 2914.000 kb on - strand, within barAat 2914.000 kb on - strand, within barAat 2914.000 kb on - strand, within barAat 2914.000 kb on - strand, within barAat 2914.002 kb on + strand, within barAat 2914.002 kb on + strand, within barAat 2914.002 kb on + strand, within barAat 2914.002 kb on + strand, within barAat 2914.005 kb on - strand, within barAat 2914.017 kb on - strand, within barAat 2914.017 kb on - strand, within barAat 2914.017 kb on - strand, within barAat 2914.018 kb on - strand, within barAat 2914.018 kb on - strand, within barAat 2914.019 kb on - strand, within barA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Azlocillin 0.00003125 mM
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2,910,721 - relA b2784 0.57 -2.2
2,910,721 - relA b2784 0.57 -0.3
2,910,721 - relA b2784 0.57 -0.1
2,910,788 - relA b2784 0.60 +0.3
2,910,788 - relA b2784 0.60 -0.2
2,910,788 - relA b2784 0.60 -0.7
2,910,895 - relA b2784 0.65 -1.3
2,910,895 - relA b2784 0.65 -0.2
2,910,898 + relA b2784 0.65 -1.2
2,910,898 + relA b2784 0.65 -0.1
2,910,921 + relA b2784 0.66 +0.3
2,910,921 + relA b2784 0.66 +1.7
2,910,985 + relA b2784 0.69 -1.6
2,911,020 - relA b2784 0.71 -0.9
2,911,134 - relA b2784 0.76 -0.2
2,911,196 + relA b2784 0.79 -1.1
2,911,201 + relA b2784 0.79 -2.3
2,911,201 + relA b2784 0.79 +0.2
2,911,283 + relA b2784 0.83 +0.2
2,911,283 + relA b2784 0.83 -1.9
2,911,283 + relA b2784 0.83 +1.0
2,911,297 + relA b2784 0.83 +0.9
2,911,300 - relA b2784 0.83 +0.7
2,911,301 - relA b2784 0.83 -0.6
2,911,301 - relA b2784 0.83 +0.2
2,911,331 + relA b2784 0.85 -0.8
2,911,331 + relA b2784 0.85 +0.4
2,911,360 - relA b2784 0.86 -0.8
2,911,456 - -1.1
2,911,488 - -0.0
2,911,525 + +0.4
2,911,525 + -0.1
2,911,568 - +0.7
2,911,568 - -1.6
2,911,572 + -0.6
2,911,572 + -1.3
2,911,598 + -0.3
2,911,690 - -0.3
2,911,795 - +0.1
2,911,851 + +0.4
2,911,851 + +1.2
2,911,854 + rumA b2785 0.10 -1.3
2,911,859 + rumA b2785 0.11 +1.0
2,911,860 - rumA b2785 0.11 +0.5
2,911,861 - rumA b2785 0.11 +0.1
2,911,870 + rumA b2785 0.11 -0.3
2,911,903 + rumA b2785 0.14 +0.3
2,911,931 - rumA b2785 0.16 -0.3
2,911,978 - rumA b2785 0.20 -1.0
2,912,077 + rumA b2785 0.27 +0.5
2,912,087 + rumA b2785 0.28 -1.0
2,912,087 + rumA b2785 0.28 +0.7
2,912,117 - rumA b2785 0.30 -0.1
2,912,168 + rumA b2785 0.34 -0.0
2,912,263 + rumA b2785 0.42 +0.4
2,912,343 - rumA b2785 0.48 +0.3
2,912,387 + rumA b2785 0.51 +0.3
2,912,433 + rumA b2785 0.55 +0.8
2,912,462 + rumA b2785 0.57 +0.5
2,912,465 - rumA b2785 0.57 -0.7
2,912,480 + rumA b2785 0.58 -0.1
2,912,556 + rumA b2785 0.64 -0.5
2,912,559 + rumA b2785 0.64 +0.8
2,912,646 + rumA b2785 0.71 +0.5
2,912,654 - rumA b2785 0.72 +1.1
2,912,668 + rumA b2785 0.73 +0.3
2,912,668 + rumA b2785 0.73 +1.3
2,912,668 + rumA b2785 0.73 -0.5
2,912,668 + rumA b2785 0.73 +0.8
2,912,709 + rumA b2785 0.76 +0.4
2,912,709 + rumA b2785 0.76 +0.2
2,912,709 - rumA b2785 0.76 +0.8
2,912,738 + rumA b2785 0.78 +0.3
2,912,954 - -0.0
2,912,975 + +0.5
2,912,975 + +0.8
2,912,986 + +0.2
2,913,047 + +0.1
2,913,094 - -0.2
2,913,119 + -0.6
2,913,177 + +0.5
2,913,177 + -0.5
2,913,184 + +2.2
2,913,184 - +0.1
2,913,213 + +0.5
2,913,218 + -0.1
2,913,218 + +0.0
2,913,218 + -1.2
2,913,223 + -0.2
2,913,252 + +0.6
2,913,257 - -0.2
2,913,258 + -0.7
2,913,288 + +1.1
2,913,288 + -0.0
2,913,288 + +0.4
2,913,288 + +0.5
2,913,294 - +0.5
2,913,294 - -0.0
2,913,296 - +0.5
2,913,298 + +0.1
2,913,315 + +0.8
2,913,323 - +0.3
2,913,323 - +0.1
2,913,361 + barA b2786 0.10 +1.1
2,913,361 + barA b2786 0.10 -1.6
2,913,395 + barA b2786 0.11 -0.0
2,913,403 + barA b2786 0.12 +0.0
2,913,403 - barA b2786 0.12 -1.6
2,913,408 + barA b2786 0.12 +0.1
2,913,424 - barA b2786 0.13 -0.4
2,913,428 - barA b2786 0.13 -0.3
2,913,428 - barA b2786 0.13 -0.7
2,913,430 + barA b2786 0.13 +0.1
2,913,435 + barA b2786 0.13 +0.5
2,913,435 + barA b2786 0.13 +1.1
2,913,435 + barA b2786 0.13 -0.4
2,913,435 + barA b2786 0.13 -0.0
2,913,435 + barA b2786 0.13 -0.2
2,913,435 + barA b2786 0.13 +1.0
2,913,435 + barA b2786 0.13 -0.2
2,913,437 + barA b2786 0.13 -0.1
2,913,439 + barA b2786 0.13 +0.6
2,913,442 - barA b2786 0.13 -1.4
2,913,443 - barA b2786 0.13 -0.2
2,913,448 - barA b2786 0.13 +0.3
2,913,458 + barA b2786 0.14 -0.2
2,913,466 - barA b2786 0.14 +1.1
2,913,468 + barA b2786 0.14 -0.8
2,913,468 + barA b2786 0.14 -0.5
2,913,478 - barA b2786 0.14 -0.2
2,913,478 - barA b2786 0.14 -0.3
2,913,478 - barA b2786 0.14 +1.1
2,913,478 - barA b2786 0.14 -0.1
2,913,490 + barA b2786 0.15 +0.4
2,913,494 - barA b2786 0.15 -0.4
2,913,495 + barA b2786 0.15 -0.0
2,913,498 + barA b2786 0.15 -0.2
2,913,513 + barA b2786 0.16 +0.1
2,913,518 + barA b2786 0.16 +0.4
2,913,518 + barA b2786 0.16 +0.6
2,913,526 - barA b2786 0.16 +2.0
2,913,549 + barA b2786 0.17 -0.1
2,913,580 - barA b2786 0.18 +0.3
2,913,580 - barA b2786 0.18 +1.5
2,913,587 + barA b2786 0.18 -1.3
2,913,594 - barA b2786 0.19 +0.4
2,913,643 + barA b2786 0.20 -0.1
2,913,675 - barA b2786 0.22 -0.1
2,913,675 - barA b2786 0.22 +1.6
2,913,680 + barA b2786 0.22 +0.4
2,913,680 + barA b2786 0.22 -0.0
2,913,682 + barA b2786 0.22 -1.6
2,913,682 + barA b2786 0.22 +1.0
2,913,688 - barA b2786 0.22 -0.6
2,913,688 - barA b2786 0.22 +0.4
2,913,688 - barA b2786 0.22 -0.3
2,913,688 - barA b2786 0.22 +0.1
2,913,702 - barA b2786 0.23 -0.5
2,913,702 - barA b2786 0.23 -1.7
2,913,703 + barA b2786 0.23 +1.2
2,913,703 + barA b2786 0.23 -1.9
2,913,705 + barA b2786 0.23 +0.4
2,913,705 + barA b2786 0.23 +0.0
2,913,713 - barA b2786 0.23 -0.2
2,913,713 - barA b2786 0.23 +0.5
2,913,713 - barA b2786 0.23 +0.0
2,913,720 - barA b2786 0.23 +0.7
2,913,721 - barA b2786 0.23 -0.5
2,913,721 - barA b2786 0.23 +0.2
2,913,739 + barA b2786 0.24 +0.5
2,913,739 + barA b2786 0.24 +0.8
2,913,739 + barA b2786 0.24 +0.4
2,913,744 - barA b2786 0.24 -0.2
2,913,744 - barA b2786 0.24 +0.2
2,913,747 - barA b2786 0.24 -0.0
2,913,747 - barA b2786 0.24 -0.7
2,913,747 - barA b2786 0.24 +0.3
2,913,766 - barA b2786 0.25 +0.3
2,913,782 - barA b2786 0.25 +0.4
2,913,813 + barA b2786 0.27 +0.3
2,913,836 - barA b2786 0.27 +0.4
2,913,836 - barA b2786 0.27 -0.3
2,913,848 + barA b2786 0.28 -0.1
2,913,848 + barA b2786 0.28 +0.6
2,913,848 + barA b2786 0.28 -1.0
2,913,848 + barA b2786 0.28 +0.1
2,913,858 + barA b2786 0.28 +0.3
2,913,858 + barA b2786 0.28 +0.3
2,913,863 + barA b2786 0.28 +0.4
2,913,863 + barA b2786 0.28 -0.4
2,913,910 + barA b2786 0.30 +0.7
2,913,910 + barA b2786 0.30 +0.1
2,913,933 + barA b2786 0.31 -0.3
2,913,933 + barA b2786 0.31 +0.7
2,913,935 + barA b2786 0.31 +0.1
2,913,935 + barA b2786 0.31 +1.1
2,913,983 - barA b2786 0.33 +0.5
2,913,984 - barA b2786 0.33 -0.5
2,913,985 + barA b2786 0.33 -0.8
2,913,987 + barA b2786 0.33 +0.4
2,913,990 + barA b2786 0.33 +0.3
2,913,990 + barA b2786 0.33 +1.2
2,913,990 + barA b2786 0.33 +0.0
2,913,990 + barA b2786 0.33 +0.4
2,913,990 + barA b2786 0.33 -0.3
2,913,990 + barA b2786 0.33 +0.7
2,913,997 + barA b2786 0.33 +0.1
2,913,997 - barA b2786 0.33 +0.4
2,913,998 - barA b2786 0.33 +0.7
2,913,998 - barA b2786 0.33 -0.6
2,913,999 + barA b2786 0.33 -1.5
2,914,000 - barA b2786 0.33 -0.7
2,914,000 - barA b2786 0.33 +0.1
2,914,000 - barA b2786 0.33 +0.0
2,914,000 - barA b2786 0.33 +0.7
2,914,002 + barA b2786 0.33 -0.3
2,914,002 + barA b2786 0.33 +1.8
2,914,002 + barA b2786 0.33 +2.4
2,914,002 + barA b2786 0.33 -0.9
2,914,005 - barA b2786 0.34 +0.1
2,914,017 - barA b2786 0.34 -0.9
2,914,017 - barA b2786 0.34 +1.2
2,914,017 - barA b2786 0.34 +0.2
2,914,018 - barA b2786 0.34 +1.3
2,914,018 - barA b2786 0.34 +0.4
2,914,019 - barA b2786 0.34 +0.7

Or see this region's nucleotide sequence