Strain Fitness in Escherichia coli BW25113 around b1337

Experiment: LB Anaerobic with Azlocillin 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydaH and abgB are separated by 36 nucleotidesabgB and ydaJ overlap by 1 nucleotides b1336: ydaH - putative pump protein (transport) (VIMSS), at 1,398,271 to 1,399,797 ydaH b1337: abgB - predicted peptidase, aminobenzoyl-glutamate utilization protein (NCBI), at 1,399,834 to 1,401,279 abgB b1338: ydaJ - putative aminohydrolase (EC 3.5.1.14) (VIMSS), at 1,401,279 to 1,402,589 ydaJ Position (kb) 1399 1400 1401 1402Strain fitness (log2 ratio) -1 0 1at 1398.846 kb on - strand, within ydaHat 1398.968 kb on - strand, within ydaHat 1398.968 kb on - strand, within ydaHat 1399.281 kb on - strand, within ydaHat 1399.573 kb on + strand, within ydaHat 1399.678 kb on + strandat 1399.678 kb on + strandat 1399.747 kb on + strandat 1399.795 kb on + strandat 1399.937 kb on + strandat 1400.259 kb on + strand, within abgBat 1400.259 kb on + strand, within abgBat 1400.627 kb on + strand, within abgBat 1400.627 kb on + strand, within abgBat 1400.983 kb on + strand, within abgBat 1401.091 kb on - strand, within abgBat 1401.172 kb on - strandat 1401.172 kb on - strandat 1401.385 kb on + strandat 1401.452 kb on - strand, within ydaJat 1401.602 kb on - strand, within ydaJat 1401.665 kb on + strand, within ydaJat 1401.801 kb on - strand, within ydaJat 1401.801 kb on - strand, within ydaJat 1401.885 kb on - strand, within ydaJat 1401.932 kb on + strand, within ydaJat 1401.932 kb on + strand, within ydaJat 1402.102 kb on - strand, within ydaJat 1402.102 kb on - strand, within ydaJat 1402.268 kb on - strand, within ydaJ

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Azlocillin 0.00003125 mM
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1,398,846 - ydaH b1336 0.38 +0.3
1,398,968 - ydaH b1336 0.46 +0.6
1,398,968 - ydaH b1336 0.46 +0.1
1,399,281 - ydaH b1336 0.66 -0.4
1,399,573 + ydaH b1336 0.85 +0.1
1,399,678 + +0.4
1,399,678 + +0.9
1,399,747 + -0.2
1,399,795 + +0.1
1,399,937 + -0.7
1,400,259 + abgB b1337 0.29 +1.0
1,400,259 + abgB b1337 0.29 +0.1
1,400,627 + abgB b1337 0.55 -0.5
1,400,627 + abgB b1337 0.55 -0.2
1,400,983 + abgB b1337 0.79 +0.3
1,401,091 - abgB b1337 0.87 +1.2
1,401,172 - +0.6
1,401,172 - +0.6
1,401,385 + +1.0
1,401,452 - ydaJ b1338 0.13 -0.2
1,401,602 - ydaJ b1338 0.25 -0.2
1,401,665 + ydaJ b1338 0.29 -0.1
1,401,801 - ydaJ b1338 0.40 -1.4
1,401,801 - ydaJ b1338 0.40 +0.1
1,401,885 - ydaJ b1338 0.46 -0.2
1,401,932 + ydaJ b1338 0.50 +0.5
1,401,932 + ydaJ b1338 0.50 +0.6
1,402,102 - ydaJ b1338 0.63 +0.9
1,402,102 - ydaJ b1338 0.63 +0.8
1,402,268 - ydaJ b1338 0.75 +0.8

Or see this region's nucleotide sequence