Strain Fitness in Escherichia coli BW25113 around b1307

Experiment: LB Anaerobic with Azlocillin 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpspA and pspB are separated by 53 nucleotidespspB and pspC overlap by 1 nucleotidespspC and pspD are separated by 8 nucleotidespspD and pspE are separated by 74 nucleotidespspE and ycjM are separated by 212 nucleotides b1304: pspA - regulatory protein for phage-shock-protein operon (NCBI), at 1,366,103 to 1,366,771 pspA b1305: pspB - phage shock protein B (NCBI), at 1,366,825 to 1,367,049 pspB b1306: pspC - DNA-binding transcriptional activator (NCBI), at 1,367,049 to 1,367,408 pspC b1307: pspD - peripheral inner membrane phage-shock protein (NCBI), at 1,367,417 to 1,367,638 pspD b1308: pspE - thiosulfate:cyanide sulfurtransferase (rhodanese) (NCBI), at 1,367,713 to 1,368,027 pspE b1309: ycjM - putative polysaccharide hydrolase (VIMSS), at 1,368,240 to 1,369,919 ycjM Position (kb) 1367 1368Strain fitness (log2 ratio) -2 -1 0 1at 1366.560 kb on + strand, within pspAat 1366.628 kb on + strand, within pspAat 1366.818 kb on - strandat 1366.840 kb on - strandat 1366.896 kb on + strand, within pspBat 1366.931 kb on + strand, within pspBat 1366.945 kb on - strand, within pspBat 1367.086 kb on + strand, within pspCat 1367.105 kb on - strand, within pspCat 1367.191 kb on + strand, within pspCat 1367.191 kb on + strand, within pspCat 1367.384 kb on + strandat 1367.424 kb on + strandat 1367.424 kb on + strandat 1367.427 kb on + strandat 1367.591 kb on + strand, within pspDat 1367.631 kb on - strandat 1367.631 kb on - strandat 1367.795 kb on + strand, within pspEat 1367.795 kb on + strand, within pspEat 1367.813 kb on - strand, within pspEat 1367.842 kb on + strand, within pspEat 1367.852 kb on + strand, within pspEat 1367.860 kb on - strand, within pspEat 1367.932 kb on + strand, within pspEat 1367.941 kb on + strand, within pspEat 1367.990 kb on + strand, within pspEat 1367.991 kb on + strand, within pspEat 1367.991 kb on + strandat 1368.049 kb on - strandat 1368.065 kb on - strandat 1368.090 kb on + strandat 1368.156 kb on + strandat 1368.323 kb on + strandat 1368.323 kb on + strandat 1368.323 kb on + strandat 1368.348 kb on + strandat 1368.432 kb on + strand, within ycjMat 1368.492 kb on + strand, within ycjMat 1368.516 kb on - strand, within ycjMat 1368.517 kb on + strand, within ycjMat 1368.573 kb on + strand, within ycjMat 1368.583 kb on - strand, within ycjMat 1368.594 kb on - strand, within ycjMat 1368.634 kb on + strand, within ycjM

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Azlocillin 0.00003125 mM
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1,366,560 + pspA b1304 0.68 -1.1
1,366,628 + pspA b1304 0.78 +0.7
1,366,818 - -1.2
1,366,840 - +0.3
1,366,896 + pspB b1305 0.32 +0.3
1,366,931 + pspB b1305 0.47 +0.2
1,366,945 - pspB b1305 0.53 -0.2
1,367,086 + pspC b1306 0.10 -1.0
1,367,105 - pspC b1306 0.16 +0.4
1,367,191 + pspC b1306 0.39 +1.1
1,367,191 + pspC b1306 0.39 -0.1
1,367,384 + +1.4
1,367,424 + +0.8
1,367,424 + -0.7
1,367,427 + -0.3
1,367,591 + pspD b1307 0.78 +0.9
1,367,631 - +1.6
1,367,631 - +0.6
1,367,795 + pspE b1308 0.26 +0.1
1,367,795 + pspE b1308 0.26 -0.4
1,367,813 - pspE b1308 0.32 -1.0
1,367,842 + pspE b1308 0.41 -0.7
1,367,852 + pspE b1308 0.44 +0.1
1,367,860 - pspE b1308 0.47 -0.4
1,367,932 + pspE b1308 0.70 -0.5
1,367,941 + pspE b1308 0.72 -0.4
1,367,990 + pspE b1308 0.88 -2.4
1,367,991 + pspE b1308 0.88 +0.8
1,367,991 + -1.4
1,368,049 - +0.1
1,368,065 - +0.6
1,368,090 + +1.6
1,368,156 + -0.7
1,368,323 + +1.6
1,368,323 + +0.1
1,368,323 + +0.1
1,368,348 + +0.6
1,368,432 + ycjM b1309 0.11 +1.6
1,368,492 + ycjM b1309 0.15 +1.6
1,368,516 - ycjM b1309 0.16 +1.6
1,368,517 + ycjM b1309 0.16 +0.6
1,368,573 + ycjM b1309 0.20 +1.6
1,368,583 - ycjM b1309 0.20 +1.6
1,368,594 - ycjM b1309 0.21 +1.6
1,368,634 + ycjM b1309 0.23 +1.6

Or see this region's nucleotide sequence