Strain Fitness in Escherichia coli BW25113 around b3480

Experiment: LB Anaerobic with Oxytetracycline 0.0000003125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Oxytetracycline 0.0000003125 mM
3,614,809	+	nikC	b3478	0.72	-0.9
3,614,868	+	nikC	b3478	0.79	-0.1
3,614,907	+	nikC	b3478	0.84	-0.2
3,614,911	-	nikC	b3478	0.85	-0.6
3,614,938	-	nikC	b3478	0.88	-0.5
3,614,983	+				-0.5
3,614,983	+				-1.1
3,615,008	-				-0.8
3,615,033	-				-1.8
3,615,047	-				-0.1
3,615,066	-				-0.5
3,615,089	+				-0.1
3,615,100	-				-2.1
3,615,103	+				-1.1
3,615,103	+				-1.4
3,615,164	+	nikD	b3479	0.16	-1.5
3,615,327	-	nikD	b3479	0.38	-1.1
3,615,330	-	nikD	b3479	0.38	-1.5
3,615,336	-	nikD	b3479	0.39	-1.1
3,615,336	-	nikD	b3479	0.39	-1.2
3,615,336	-	nikD	b3479	0.39	-0.8
3,615,337	-	nikD	b3479	0.39	-1.5
3,615,337	-	nikD	b3479	0.39	-0.7
3,615,337	-	nikD	b3479	0.39	+0.9
3,615,364	+	nikD	b3479	0.43	-0.4
3,615,432	-	nikD	b3479	0.52	-0.5
3,615,443	-	nikD	b3479	0.53	+0.5
3,615,445	+	nikD	b3479	0.53	+0.5
3,615,445	+	nikD	b3479	0.53	-0.3
3,615,500	+	nikD	b3479	0.60	-0.8
3,615,500	+	nikD	b3479	0.60	-0.2
3,615,513	-	nikD	b3479	0.62	-0.9
3,615,528	+	nikD	b3479	0.64	-1.0
3,615,565	+	nikD	b3479	0.69	-0.9
3,615,565	+	nikD	b3479	0.69	-1.0
3,615,573	+	nikD	b3479	0.70	-1.1
3,615,706	-	nikD	b3479	0.87	-0.8
3,615,708	+	nikD	b3479	0.88	+0.4
3,615,708	+	nikD	b3479	0.88	-0.1
3,615,711	-	nikD	b3479	0.88	-0.6
3,615,729	+				-1.0
3,615,735	+				-0.2
3,615,735	+				-0.8
3,615,783	+				-0.5
3,615,783	+				-0.9
3,615,820	+				-0.4
3,615,892	+	nikE	b3480	0.12	-0.2
3,615,892	+	nikE	b3480	0.12	+0.2
3,615,899	+	nikE	b3480	0.12	-1.4
3,615,966	+	nikE	b3480	0.21	-0.4
3,615,966	+	nikE	b3480	0.21	-2.1
3,615,966	+	nikE	b3480	0.21	-0.6
3,615,977	+	nikE	b3480	0.22	-0.2
3,616,047	+	nikE	b3480	0.31	-1.1
3,616,078	+	nikE	b3480	0.35	-1.5
3,616,091	+	nikE	b3480	0.36	-0.6
3,616,110	+	nikE	b3480	0.39	-1.0
3,616,157	-	nikE	b3480	0.44	+0.9
3,616,224	+	nikE	b3480	0.53	-2.0
3,616,287	-	nikE	b3480	0.60	-0.1
3,616,424	-	nikE	b3480	0.77	-0.5
3,616,444	-	nikE	b3480	0.80	+0.4
3,616,444	-	nikE	b3480	0.80	-0.9
3,616,490	+	nikE	b3480	0.86	-0.0
3,616,572	-				+0.1
3,616,691	-	nikR	b3481	0.20	-0.1
3,616,721	-	nikR	b3481	0.27	-0.6
3,616,723	+	nikR	b3481	0.28	-0.5
3,616,743	+	nikR	b3481	0.33	-1.4
3,616,764	-	nikR	b3481	0.38	+0.1
3,616,793	-	nikR	b3481	0.45	-1.4
3,616,793	-	nikR	b3481	0.45	+0.5
3,616,815	-	nikR	b3481	0.51	+0.2
3,616,853	+	nikR	b3481	0.60	+0.8
3,616,853	+	nikR	b3481	0.60	-0.1
3,616,872	+	nikR	b3481	0.65	+0.2
3,616,932	+	nikR	b3481	0.80	-0.2
3,616,937	+	nikR	b3481	0.81	+0.2
3,617,048	-				-0.1
3,617,063	+				+1.0
3,617,063	+				-0.3
3,617,065	-				-1.0
3,617,069	-				+0.2
3,617,069	-				-0.0
3,617,069	-				+1.1
3,617,083	-				-1.0
3,617,083	-				+0.5
3,617,085	+				+0.2
3,617,177	+				-0.4
3,617,200	+				+0.5
3,617,251	+				+0.2
3,617,251	+				-0.7
3,617,290	+				+0.6