Experiment: LB Anaerobic with Spiramycin 0.000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hycE and hycD are separated by 17 nucleotides hycD and hycC are separated by 2 nucleotides hycC and hycB overlap by 4 nucleotides hycB and hycA are separated by 124 nucleotides
b2721: hycE - hydrogenase 3, large subunit (NCBI), at 2,842,784 to 2,844,493
hycE
b2722: hycD - hydrogenase 3, membrane subunit (NCBI), at 2,844,511 to 2,845,434
hycD
b2723: hycC - NADH dehydrogenase subunit N (NCBI), at 2,845,437 to 2,847,263
hycC
b2724: hycB - hydrogenase 3, Fe-S subunit (NCBI), at 2,847,260 to 2,847,871
hycB
b2725: hycA - regulator of the transcriptional regulator FhlA (NCBI), at 2,847,996 to 2,848,457
hycA
Position (kb)
2845
2846
2847
2848 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2844.443 kb on - strand at 2844.462 kb on + strand at 2844.470 kb on - strand at 2844.470 kb on - strand at 2844.569 kb on - strand at 2844.576 kb on + strand at 2844.607 kb on - strand, within hycD at 2844.761 kb on - strand, within hycD at 2844.789 kb on - strand, within hycD at 2844.937 kb on + strand, within hycD at 2844.945 kb on - strand, within hycD at 2844.945 kb on - strand, within hycD at 2844.984 kb on + strand, within hycD at 2845.140 kb on - strand, within hycD at 2845.212 kb on - strand, within hycD at 2845.231 kb on - strand, within hycD at 2845.269 kb on - strand, within hycD at 2845.320 kb on + strand, within hycD at 2845.428 kb on - strand at 2845.428 kb on - strand at 2845.487 kb on + strand at 2845.594 kb on + strand at 2845.594 kb on + strand at 2846.220 kb on + strand, within hycC at 2846.226 kb on + strand, within hycC at 2846.264 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.269 kb on + strand, within hycC at 2846.272 kb on - strand, within hycC at 2846.345 kb on - strand, within hycC at 2846.381 kb on + strand, within hycC at 2846.406 kb on - strand, within hycC at 2846.406 kb on - strand, within hycC at 2846.475 kb on - strand, within hycC at 2846.506 kb on - strand, within hycC at 2846.699 kb on + strand, within hycC at 2846.699 kb on + strand, within hycC at 2846.731 kb on - strand, within hycC at 2846.810 kb on - strand, within hycC at 2846.886 kb on - strand, within hycC at 2846.886 kb on - strand, within hycC at 2846.941 kb on - strand, within hycC at 2846.953 kb on + strand, within hycC at 2846.953 kb on + strand, within hycC at 2846.977 kb on + strand, within hycC at 2846.985 kb on - strand, within hycC at 2846.985 kb on - strand, within hycC at 2847.072 kb on - strand, within hycC at 2847.099 kb on + strand at 2847.139 kb on - strand at 2847.276 kb on - strand at 2847.353 kb on + strand, within hycB at 2847.363 kb on + strand, within hycB at 2847.421 kb on + strand, within hycB at 2847.437 kb on - strand, within hycB at 2847.455 kb on + strand, within hycB at 2847.621 kb on + strand, within hycB at 2847.621 kb on + strand, within hycB at 2847.621 kb on - strand, within hycB at 2847.644 kb on + strand, within hycB at 2847.703 kb on + strand, within hycB at 2847.711 kb on - strand, within hycB at 2847.722 kb on - strand, within hycB at 2847.761 kb on - strand, within hycB at 2847.822 kb on - strand at 2847.829 kb on + strand at 2847.829 kb on + strand at 2847.888 kb on - strand at 2847.953 kb on - strand at 2848.071 kb on - strand, within hycA at 2848.073 kb on - strand, within hycA at 2848.073 kb on - strand, within hycA at 2848.082 kb on - strand, within hycA at 2848.153 kb on - strand, within hycA at 2848.153 kb on - strand, within hycA at 2848.157 kb on + strand, within hycA at 2848.157 kb on + strand, within hycA at 2848.253 kb on - strand, within hycA at 2848.253 kb on - strand, within hycA
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Spiramycin 0.000125 mM remove 2,844,443 - +0.9 2,844,462 + +0.6 2,844,470 - -0.0 2,844,470 - +0.7 2,844,569 - +1.5 2,844,576 + -0.3 2,844,607 - hycD b2722 0.10 +0.4 2,844,761 - hycD b2722 0.27 +0.6 2,844,789 - hycD b2722 0.30 -0.3 2,844,937 + hycD b2722 0.46 +0.6 2,844,945 - hycD b2722 0.47 +0.5 2,844,945 - hycD b2722 0.47 +1.9 2,844,984 + hycD b2722 0.51 +0.2 2,845,140 - hycD b2722 0.68 -0.6 2,845,212 - hycD b2722 0.76 +0.1 2,845,231 - hycD b2722 0.78 +1.5 2,845,269 - hycD b2722 0.82 -1.4 2,845,320 + hycD b2722 0.88 -0.5 2,845,428 - +0.3 2,845,428 - +1.2 2,845,487 + +0.2 2,845,594 + -0.5 2,845,594 + -0.9 2,846,220 + hycC b2723 0.43 +0.6 2,846,226 + hycC b2723 0.43 -0.3 2,846,264 + hycC b2723 0.45 -0.8 2,846,269 + hycC b2723 0.46 +0.2 2,846,269 + hycC b2723 0.46 +0.9 2,846,269 + hycC b2723 0.46 +1.9 2,846,269 + hycC b2723 0.46 -1.9 2,846,272 - hycC b2723 0.46 -2.7 2,846,345 - hycC b2723 0.50 +0.3 2,846,381 + hycC b2723 0.52 -0.9 2,846,406 - hycC b2723 0.53 -1.1 2,846,406 - hycC b2723 0.53 +1.0 2,846,475 - hycC b2723 0.57 +0.6 2,846,506 - hycC b2723 0.59 +0.1 2,846,699 + hycC b2723 0.69 -0.5 2,846,699 + hycC b2723 0.69 +1.0 2,846,731 - hycC b2723 0.71 -0.4 2,846,810 - hycC b2723 0.75 +0.9 2,846,886 - hycC b2723 0.79 +0.9 2,846,886 - hycC b2723 0.79 +1.1 2,846,941 - hycC b2723 0.82 -0.8 2,846,953 + hycC b2723 0.83 +1.1 2,846,953 + hycC b2723 0.83 -0.5 2,846,977 + hycC b2723 0.84 -1.6 2,846,985 - hycC b2723 0.85 +0.6 2,846,985 - hycC b2723 0.85 +0.7 2,847,072 - hycC b2723 0.89 +0.1 2,847,099 + -0.3 2,847,139 - +0.2 2,847,276 - -0.1 2,847,353 + hycB b2724 0.15 +1.6 2,847,363 + hycB b2724 0.17 +0.4 2,847,421 + hycB b2724 0.26 -2.0 2,847,437 - hycB b2724 0.29 -1.0 2,847,455 + hycB b2724 0.32 -0.2 2,847,621 + hycB b2724 0.59 +1.1 2,847,621 + hycB b2724 0.59 -0.5 2,847,621 - hycB b2724 0.59 +1.3 2,847,644 + hycB b2724 0.63 +0.3 2,847,703 + hycB b2724 0.72 -0.0 2,847,711 - hycB b2724 0.74 -3.1 2,847,722 - hycB b2724 0.75 +0.5 2,847,761 - hycB b2724 0.82 +0.8 2,847,822 - +0.0 2,847,829 + -0.6 2,847,829 + +0.5 2,847,888 - +0.2 2,847,953 - +0.9 2,848,071 - hycA b2725 0.16 +0.5 2,848,073 - hycA b2725 0.17 +0.5 2,848,073 - hycA b2725 0.17 +0.1 2,848,082 - hycA b2725 0.19 +1.1 2,848,153 - hycA b2725 0.34 -1.3 2,848,153 - hycA b2725 0.34 +0.5 2,848,157 + hycA b2725 0.35 +1.1 2,848,157 + hycA b2725 0.35 +1.1 2,848,253 - hycA b2725 0.56 -2.8 2,848,253 - hycA b2725 0.56 +0.4
Or see this region's nucleotide sequence