Strain Fitness in Escherichia coli BW25113 around b2432

Experiment: LB Anaerobic with Spiramycin 0.000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb2431 and yfeY are separated by 95 nucleotidesyfeY and b2433 are separated by 60 nucleotidesb2433 and b2434 overlap by 14 nucleotides b2431: b2431 - orf, hypothetical protein (VIMSS), at 2,547,668 to 2,548,567 b2431 b2432: yfeY - hypothetical protein (NCBI), at 2,548,663 to 2,549,238 yfeY b2433: b2433 - orf, hypothetical protein (VIMSS), at 2,549,299 to 2,549,748 b2433 b2434: b2434 - orf, hypothetical protein (VIMSS), at 2,549,735 to 2,550,160 b2434 Position (kb) 2548 2549 2550Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2547.774 kb on + strand, within b2431at 2547.790 kb on + strand, within b2431at 2547.798 kb on - strand, within b2431at 2547.813 kb on + strand, within b2431at 2547.824 kb on + strand, within b2431at 2547.827 kb on - strand, within b2431at 2547.830 kb on - strand, within b2431at 2547.834 kb on + strand, within b2431at 2547.929 kb on - strandat 2547.929 kb on - strand, within b2431at 2547.937 kb on - strand, within b2431at 2547.937 kb on - strand, within b2431at 2547.991 kb on + strand, within b2431at 2547.999 kb on - strand, within b2431at 2548.032 kb on - strand, within b2431at 2548.032 kb on - strand, within b2431at 2548.044 kb on - strand, within b2431at 2548.054 kb on + strand, within b2431at 2548.054 kb on + strand, within b2431at 2548.072 kb on + strand, within b2431at 2548.163 kb on + strand, within b2431at 2548.201 kb on + strand, within b2431at 2548.203 kb on + strand, within b2431at 2548.229 kb on - strand, within b2431at 2548.322 kb on - strand, within b2431at 2548.537 kb on - strandat 2548.537 kb on - strandat 2548.895 kb on + strand, within yfeYat 2549.078 kb on + strand, within yfeYat 2549.078 kb on + strand, within yfeYat 2549.210 kb on + strandat 2549.253 kb on - strandat 2549.266 kb on - strandat 2549.348 kb on + strand, within b2433at 2549.388 kb on + strand, within b2433at 2549.645 kb on + strand, within b2433at 2549.680 kb on + strand, within b2433at 2549.680 kb on + strand, within b2433at 2549.746 kb on - strandat 2549.795 kb on + strand, within b2434at 2549.833 kb on - strand, within b2434at 2549.864 kb on + strand, within b2434at 2550.001 kb on + strand, within b2434at 2550.037 kb on + strand, within b2434

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Spiramycin 0.000125 mM
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2,547,774 + b2431 b2431 0.12 -0.3
2,547,790 + b2431 b2431 0.14 +0.8
2,547,798 - b2431 b2431 0.14 -0.4
2,547,813 + b2431 b2431 0.16 -0.3
2,547,824 + b2431 b2431 0.17 -0.3
2,547,827 - b2431 b2431 0.18 +1.1
2,547,830 - b2431 b2431 0.18 +0.5
2,547,834 + b2431 b2431 0.18 -0.2
2,547,929 - +3.0
2,547,929 - b2431 b2431 0.29 +0.3
2,547,937 - b2431 b2431 0.30 +0.4
2,547,937 - b2431 b2431 0.30 +0.0
2,547,991 + b2431 b2431 0.36 -0.3
2,547,999 - b2431 b2431 0.37 +0.4
2,548,032 - b2431 b2431 0.40 +0.3
2,548,032 - b2431 b2431 0.40 -0.0
2,548,044 - b2431 b2431 0.42 +1.1
2,548,054 + b2431 b2431 0.43 -0.9
2,548,054 + b2431 b2431 0.43 +0.1
2,548,072 + b2431 b2431 0.45 +1.2
2,548,163 + b2431 b2431 0.55 +0.3
2,548,201 + b2431 b2431 0.59 +0.4
2,548,203 + b2431 b2431 0.59 +0.2
2,548,229 - b2431 b2431 0.62 -1.9
2,548,322 - b2431 b2431 0.73 -0.3
2,548,537 - -1.1
2,548,537 - -0.3
2,548,895 + yfeY b2432 0.40 -0.5
2,549,078 + yfeY b2432 0.72 +1.9
2,549,078 + yfeY b2432 0.72 +0.0
2,549,210 + -0.0
2,549,253 - +0.0
2,549,266 - -0.6
2,549,348 + b2433 b2433 0.11 -1.3
2,549,388 + b2433 b2433 0.20 -0.8
2,549,645 + b2433 b2433 0.77 -0.5
2,549,680 + b2433 b2433 0.85 -1.1
2,549,680 + b2433 b2433 0.85 +0.7
2,549,746 - +0.3
2,549,795 + b2434 b2434 0.14 +2.7
2,549,833 - b2434 b2434 0.23 -0.1
2,549,864 + b2434 b2434 0.30 -0.5
2,550,001 + b2434 b2434 0.62 -0.0
2,550,037 + b2434 b2434 0.71 +0.3

Or see this region's nucleotide sequence