Strain Fitness in Escherichia coli BW25113 around b1111

Experiment: LB Anaerobic with Spiramycin 0.000125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Spiramycin 0.000125 mM
1,166,478	-	ndh	b1109	0.90	+0.0
1,166,501	-				+0.9
1,166,526	+				+0.2
1,166,573	-				-0.5
1,166,623	-				-0.3
1,166,655	+				+0.7
1,166,661	-				-0.3
1,166,824	+				+1.0
1,166,972	+	ycfJ	b1110	0.28	+1.6
1,166,972	+	ycfJ	b1110	0.28	+0.4
1,166,972	+	ycfJ	b1110	0.28	-1.5
1,166,972	+	ycfJ	b1110	0.28	+0.9
1,166,980	+	ycfJ	b1110	0.29	+0.5
1,167,051	+	ycfJ	b1110	0.42	-0.7
1,167,051	+	ycfJ	b1110	0.42	-0.7
1,167,125	+	ycfJ	b1110	0.56	+0.3
1,167,132	+	ycfJ	b1110	0.57	-0.5
1,167,132	+	ycfJ	b1110	0.57	+0.3
1,167,243	+	ycfJ	b1110	0.78	+0.2
1,167,243	+	ycfJ	b1110	0.78	+1.6
1,167,243	+	ycfJ	b1110	0.78	-1.4
1,167,251	-	ycfJ	b1110	0.79	-0.1
1,167,263	-	ycfJ	b1110	0.82	+0.4
1,167,263	-	ycfJ	b1110	0.82	+0.4
1,167,362	-				-1.5
1,167,364	+				-0.4
1,167,364	+				+1.0
1,167,640	+	ycfQ	b1111	0.34	+0.0
1,167,840	+	ycfQ	b1111	0.66	-0.9
1,167,840	-	ycfQ	b1111	0.66	+0.6
1,167,949	-	ycfQ	b1111	0.83	-2.6
1,168,045	-				+0.5
1,168,045	-				+0.5
1,168,075	-				-0.3
1,168,075	-				-0.2
1,168,746	+	ycfS	b1113	0.12	+0.3
1,168,766	+	ycfS	b1113	0.14	-1.2
1,168,802	+	ycfS	b1113	0.17	+0.7
1,168,805	+	ycfS	b1113	0.18	+1.2
1,168,870	+	ycfS	b1113	0.24	-0.4
1,168,925	-	ycfS	b1113	0.30	-0.9
1,169,013	+	ycfS	b1113	0.39	+1.0