Strain Fitness in Escherichia coli BW25113 around b0074

Experiment: LB Anaerobic with Spiramycin 0.000125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuB and leuA overlap by 1 nucleotidesleuA and leuL are separated by 92 nucleotidesleuL and leuO are separated by 659 nucleotides b0073: leuB - 3-isopropylmalate dehydrogenase (VIMSS), at 80,867 to 81,958 leuB b0074: leuA - 2-isopropylmalate synthase (NCBI), at 81,958 to 83,529 leuA b0075: leuL - leu operon leader peptide (NCBI), at 83,622 to 83,708 leuL b0076: leuO - probable transcriptional activator for leuABCD operon (VIMSS), at 84,368 to 85,312 leuO Position (kb) 81 82 83 84Strain fitness (log2 ratio) -2 -1 0 1 2 3at 80.965 kb on + strandat 80.973 kb on - strandat 80.986 kb on - strand, within leuBat 81.032 kb on - strand, within leuBat 81.037 kb on + strand, within leuBat 81.114 kb on + strand, within leuBat 81.114 kb on + strand, within leuBat 81.122 kb on - strand, within leuBat 81.191 kb on - strand, within leuBat 81.191 kb on - strand, within leuBat 81.224 kb on + strand, within leuBat 81.284 kb on + strand, within leuBat 81.284 kb on + strand, within leuBat 81.287 kb on + strand, within leuBat 81.290 kb on - strand, within leuBat 81.292 kb on - strand, within leuBat 81.292 kb on - strand, within leuBat 81.314 kb on - strand, within leuBat 81.404 kb on + strand, within leuBat 81.409 kb on - strand, within leuBat 81.457 kb on + strand, within leuBat 81.480 kb on + strand, within leuBat 81.554 kb on - strand, within leuBat 81.580 kb on + strand, within leuBat 81.607 kb on - strand, within leuBat 81.692 kb on + strand, within leuBat 81.692 kb on + strand, within leuBat 81.910 kb on + strandat 81.910 kb on + strandat 81.922 kb on - strandat 82.051 kb on + strandat 82.135 kb on + strand, within leuAat 82.243 kb on + strand, within leuAat 82.243 kb on + strand, within leuAat 82.246 kb on - strand, within leuAat 82.425 kb on + strand, within leuAat 82.462 kb on - strand, within leuAat 82.462 kb on - strand, within leuAat 82.502 kb on - strand, within leuAat 82.506 kb on - strand, within leuAat 82.624 kb on + strand, within leuAat 82.632 kb on - strand, within leuAat 82.635 kb on + strand, within leuAat 82.637 kb on + strand, within leuAat 82.638 kb on - strand, within leuAat 82.638 kb on - strand, within leuAat 82.647 kb on + strand, within leuAat 82.671 kb on - strand, within leuAat 82.671 kb on - strand, within leuAat 82.671 kb on - strand, within leuAat 82.713 kb on + strand, within leuAat 82.860 kb on + strand, within leuAat 82.860 kb on + strand, within leuAat 82.870 kb on + strand, within leuAat 82.878 kb on - strand, within leuAat 82.963 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.190 kb on - strand, within leuAat 83.360 kb on - strand, within leuAat 83.360 kb on - strand, within leuAat 83.465 kb on - strandat 83.465 kb on - strandat 83.470 kb on + strandat 83.486 kb on - strandat 83.525 kb on + strandat 83.525 kb on - strandat 83.547 kb on + strandat 83.557 kb on + strandat 83.561 kb on + strandat 83.610 kb on + strandat 83.619 kb on + strandat 83.620 kb on + strandat 83.620 kb on + strandat 83.620 kb on + strandat 83.622 kb on - strandat 83.625 kb on + strandat 83.627 kb on - strandat 83.627 kb on - strandat 83.627 kb on - strandat 83.627 kb on - strandat 83.635 kb on - strand, within leuLat 83.640 kb on + strand, within leuLat 83.640 kb on + strand, within leuLat 83.642 kb on + strand, within leuLat 83.642 kb on + strand, within leuLat 83.643 kb on - strand, within leuLat 83.643 kb on - strand, within leuLat 83.644 kb on + strand, within leuLat 83.645 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.660 kb on - strand, within leuLat 83.660 kb on - strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.676 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.691 kb on - strand, within leuLat 83.691 kb on - strand, within leuLat 83.704 kb on - strandat 83.706 kb on - strandat 83.717 kb on + strandat 83.730 kb on + strandat 83.730 kb on + strandat 83.730 kb on - strandat 83.745 kb on - strandat 83.772 kb on + strandat 83.772 kb on + strandat 83.774 kb on - strandat 83.774 kb on - strandat 83.832 kb on + strandat 83.832 kb on + strandat 83.897 kb on + strandat 83.920 kb on + strandat 83.950 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 84.187 kb on + strandat 84.199 kb on + strandat 84.199 kb on + strandat 84.348 kb on + strandat 84.354 kb on - strandat 84.354 kb on - strandat 84.362 kb on - strandat 84.364 kb on - strandat 84.364 kb on - strandat 84.367 kb on - strandat 84.369 kb on - strandat 84.370 kb on + strandat 84.380 kb on + strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.393 kb on - strandat 84.398 kb on - strandat 84.412 kb on - strandat 84.414 kb on + strandat 84.414 kb on + strandat 84.414 kb on + strandat 84.414 kb on + strandat 84.414 kb on - strandat 84.414 kb on - strandat 84.419 kb on + strandat 84.422 kb on - strandat 84.424 kb on + strandat 84.424 kb on + strandat 84.425 kb on + strandat 84.429 kb on - strandat 84.429 kb on - strandat 84.432 kb on - strandat 84.432 kb on - strandat 84.432 kb on - strandat 84.433 kb on - strandat 84.442 kb on - strandat 84.443 kb on - strandat 84.443 kb on - strandat 84.469 kb on - strand, within leuOat 84.480 kb on + strand, within leuOat 84.480 kb on + strand, within leuOat 84.480 kb on + strand, within leuOat 84.480 kb on + strand, within leuOat 84.484 kb on + strand, within leuOat 84.484 kb on + strand, within leuOat 84.486 kb on - strand, within leuOat 84.486 kb on - strand, within leuOat 84.488 kb on - strand, within leuOat 84.488 kb on - strand, within leuOat 84.488 kb on - strand, within leuOat 84.508 kb on - strand, within leuOat 84.515 kb on - strand, within leuOat 84.515 kb on - strand, within leuO

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Spiramycin 0.000125 mM
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80,965 + +0.8
80,973 - +0.2
80,986 - leuB b0073 0.11 -0.0
81,032 - leuB b0073 0.15 -1.4
81,037 + leuB b0073 0.16 +0.5
81,114 + leuB b0073 0.23 +0.8
81,114 + leuB b0073 0.23 +0.4
81,122 - leuB b0073 0.23 +0.2
81,191 - leuB b0073 0.30 +0.5
81,191 - leuB b0073 0.30 -1.9
81,224 + leuB b0073 0.33 +0.1
81,284 + leuB b0073 0.38 +1.9
81,284 + leuB b0073 0.38 +0.5
81,287 + leuB b0073 0.38 -0.4
81,290 - leuB b0073 0.39 +0.5
81,292 - leuB b0073 0.39 -0.4
81,292 - leuB b0073 0.39 -0.3
81,314 - leuB b0073 0.41 -2.0
81,404 + leuB b0073 0.49 +0.2
81,409 - leuB b0073 0.50 +1.3
81,457 + leuB b0073 0.54 +0.2
81,480 + leuB b0073 0.56 -0.1
81,554 - leuB b0073 0.63 -0.2
81,580 + leuB b0073 0.65 -0.1
81,607 - leuB b0073 0.68 -0.0
81,692 + leuB b0073 0.76 +0.8
81,692 + leuB b0073 0.76 +0.2
81,910 + +0.3
81,910 + +1.6
81,922 - -0.5
82,051 + +0.6
82,135 + leuA b0074 0.11 -0.6
82,243 + leuA b0074 0.18 -0.9
82,243 + leuA b0074 0.18 -1.0
82,246 - leuA b0074 0.18 +1.4
82,425 + leuA b0074 0.30 +0.4
82,462 - leuA b0074 0.32 -0.2
82,462 - leuA b0074 0.32 -1.4
82,502 - leuA b0074 0.35 -0.6
82,506 - leuA b0074 0.35 -0.4
82,624 + leuA b0074 0.42 +0.7
82,632 - leuA b0074 0.43 -0.5
82,635 + leuA b0074 0.43 -1.4
82,637 + leuA b0074 0.43 -0.0
82,638 - leuA b0074 0.43 -0.5
82,638 - leuA b0074 0.43 +0.1
82,647 + leuA b0074 0.44 +0.5
82,671 - leuA b0074 0.45 -1.5
82,671 - leuA b0074 0.45 -1.0
82,671 - leuA b0074 0.45 +0.2
82,713 + leuA b0074 0.48 +0.8
82,860 + leuA b0074 0.57 -0.4
82,860 + leuA b0074 0.57 +1.7
82,870 + leuA b0074 0.58 +0.9
82,878 - leuA b0074 0.59 +0.9
82,963 + leuA b0074 0.64 -0.5
83,006 + leuA b0074 0.67 -1.6
83,006 + leuA b0074 0.67 -0.2
83,006 + leuA b0074 0.67 -0.2
83,006 + leuA b0074 0.67 -2.6
83,006 + leuA b0074 0.67 +0.6
83,190 - leuA b0074 0.78 +0.3
83,360 - leuA b0074 0.89 +0.6
83,360 - leuA b0074 0.89 +0.7
83,465 - +0.3
83,465 - -0.1
83,470 + +0.6
83,486 - -0.1
83,525 + -0.2
83,525 - -0.1
83,547 + +0.7
83,557 + -0.1
83,561 + -0.3
83,610 + +0.3
83,619 + +0.3
83,620 + -0.9
83,620 + +0.8
83,620 + -0.6
83,622 - -0.7
83,625 + +0.2
83,627 - +0.7
83,627 - -0.1
83,627 - +0.6
83,627 - +0.1
83,635 - leuL b0075 0.15 +0.4
83,640 + leuL b0075 0.21 +0.3
83,640 + leuL b0075 0.21 -1.7
83,642 + leuL b0075 0.23 +0.8
83,642 + leuL b0075 0.23 -0.6
83,643 - leuL b0075 0.24 -0.4
83,643 - leuL b0075 0.24 +0.5
83,644 + leuL b0075 0.25 +0.2
83,645 - leuL b0075 0.26 +0.2
83,650 - leuL b0075 0.32 -1.3
83,650 - leuL b0075 0.32 -0.1
83,650 - leuL b0075 0.32 -0.7
83,650 - leuL b0075 0.32 +0.8
83,660 - leuL b0075 0.44 -1.3
83,660 - leuL b0075 0.44 -1.2
83,675 + leuL b0075 0.61 -0.5
83,675 + leuL b0075 0.61 -2.4
83,675 + leuL b0075 0.61 -0.3
83,675 + leuL b0075 0.61 +0.4
83,675 + leuL b0075 0.61 -0.4
83,675 + leuL b0075 0.61 -1.8
83,676 - leuL b0075 0.62 -0.1
83,683 - leuL b0075 0.70 -0.3
83,683 - leuL b0075 0.70 +0.1
83,683 - leuL b0075 0.70 +0.5
83,683 - leuL b0075 0.70 +1.4
83,683 - leuL b0075 0.70 -0.1
83,683 - leuL b0075 0.70 +1.8
83,683 - leuL b0075 0.70 +0.5
83,691 - leuL b0075 0.79 +0.4
83,691 - leuL b0075 0.79 -0.8
83,704 - +1.9
83,706 - -0.6
83,717 + +0.0
83,730 + -0.4
83,730 + -0.8
83,730 - +0.4
83,745 - +0.1
83,772 + -0.7
83,772 + -1.9
83,774 - +0.9
83,774 - +1.9
83,832 + -0.7
83,832 + -1.3
83,897 + +0.1
83,920 + +0.3
83,950 + +1.9
83,959 + +0.9
83,959 + +0.0
83,959 + -0.7
83,959 + +0.0
83,959 + -0.4
83,959 + +0.3
84,187 + +1.9
84,199 + +1.9
84,199 + +1.9
84,348 + +1.9
84,354 - +0.3
84,354 - +0.9
84,362 - +1.9
84,364 - -1.6
84,364 - +0.3
84,367 - +0.9
84,369 - +0.3
84,370 + +1.9
84,380 + +1.9
84,384 - +1.9
84,384 - +1.9
84,384 - -0.1
84,384 - -1.1
84,384 - +1.9
84,393 - -0.1
84,398 - -1.1
84,412 - +0.7
84,414 + +0.3
84,414 + +0.9
84,414 + -0.4
84,414 + +1.9
84,414 - +0.3
84,414 - -0.7
84,419 + +1.9
84,422 - -1.7
84,424 + +1.9
84,424 + -0.4
84,425 + +1.9
84,429 - +0.9
84,429 - -1.4
84,432 - +0.9
84,432 - -0.9
84,432 - +0.6
84,433 - -0.9
84,442 - +1.9
84,443 - +0.3
84,443 - -0.1
84,469 - leuO b0076 0.11 +1.9
84,480 + leuO b0076 0.12 -0.9
84,480 + leuO b0076 0.12 -0.1
84,480 + leuO b0076 0.12 +0.9
84,480 + leuO b0076 0.12 +1.6
84,484 + leuO b0076 0.12 +0.9
84,484 + leuO b0076 0.12 +2.2
84,486 - leuO b0076 0.12 +1.9
84,486 - leuO b0076 0.12 +2.9
84,488 - leuO b0076 0.13 -0.7
84,488 - leuO b0076 0.13 -0.3
84,488 - leuO b0076 0.13 -1.0
84,508 - leuO b0076 0.15 -1.2
84,515 - leuO b0076 0.16 +1.9
84,515 - leuO b0076 0.16 +1.3

Or see this region's nucleotide sequence