Experiment: LB Anaerobic with Phenazine ethosulfate 0.000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yidX and yidA are separated by 45 nucleotides yidA and yidB are separated by 114 nucleotides yidB and gyrB are separated by 239 nucleotides
b3696: yidX - predicted lipoproteinC (NCBI), at 3,873,461 to 3,874,117
yidX
b3697: yidA - predicted hydrolase (NCBI), at 3,874,163 to 3,874,975
yidA
b3698: yidB - orf, hypothetical protein (VIMSS), at 3,875,090 to 3,875,488
yidB
b3699: gyrB - DNA gyrase subunit B (NCBI), at 3,875,728 to 3,878,142
gyrB
Position (kb)
3875
3876 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3874.096 kb on + strand at 3874.128 kb on + strand at 3874.128 kb on + strand at 3874.152 kb on - strand at 3874.161 kb on + strand at 3874.169 kb on + strand at 3874.201 kb on - strand at 3874.210 kb on - strand at 3874.210 kb on - strand at 3874.255 kb on - strand, within yidA at 3874.255 kb on - strand, within yidA at 3874.270 kb on - strand, within yidA at 3874.271 kb on - strand, within yidA at 3874.273 kb on + strand, within yidA at 3874.275 kb on - strand, within yidA at 3874.275 kb on - strand, within yidA at 3874.282 kb on + strand, within yidA at 3874.350 kb on - strand, within yidA at 3874.440 kb on + strand, within yidA at 3874.448 kb on - strand, within yidA at 3874.465 kb on + strand, within yidA at 3874.478 kb on + strand, within yidA at 3874.478 kb on + strand, within yidA at 3874.483 kb on + strand, within yidA at 3874.518 kb on + strand, within yidA at 3874.523 kb on - strand, within yidA at 3874.523 kb on - strand, within yidA at 3874.530 kb on + strand, within yidA at 3874.530 kb on + strand, within yidA at 3874.557 kb on + strand, within yidA at 3874.564 kb on - strand, within yidA at 3874.591 kb on - strand, within yidA at 3874.591 kb on - strand, within yidA at 3874.597 kb on - strand, within yidA at 3874.597 kb on - strand, within yidA at 3874.599 kb on + strand, within yidA at 3874.617 kb on + strand, within yidA at 3874.633 kb on + strand, within yidA at 3874.633 kb on + strand, within yidA at 3874.639 kb on - strand, within yidA at 3874.643 kb on + strand, within yidA at 3874.643 kb on + strand, within yidA at 3874.651 kb on - strand, within yidA at 3874.651 kb on - strand, within yidA at 3874.651 kb on - strand, within yidA at 3874.651 kb on - strand, within yidA at 3874.651 kb on - strand, within yidA at 3874.657 kb on + strand, within yidA at 3874.657 kb on + strand, within yidA at 3874.710 kb on - strand, within yidA at 3874.739 kb on - strand, within yidA at 3874.739 kb on - strand, within yidA at 3874.739 kb on - strand, within yidA at 3874.739 kb on - strand, within yidA at 3874.739 kb on - strand, within yidA at 3874.748 kb on + strand, within yidA at 3874.753 kb on + strand, within yidA at 3874.753 kb on + strand, within yidA at 3874.785 kb on + strand, within yidA at 3874.792 kb on + strand, within yidA at 3874.803 kb on - strand, within yidA at 3874.820 kb on + strand, within yidA at 3874.828 kb on - strand, within yidA at 3874.833 kb on + strand, within yidA at 3874.833 kb on + strand, within yidA at 3874.916 kb on + strand at 3874.916 kb on + strand at 3874.926 kb on + strand at 3874.928 kb on + strand at 3874.928 kb on + strand at 3874.930 kb on + strand at 3874.930 kb on + strand at 3874.938 kb on + strand at 3875.003 kb on - strand at 3875.003 kb on - strand at 3875.020 kb on - strand at 3875.043 kb on - strand at 3875.172 kb on + strand, within yidB at 3875.172 kb on + strand, within yidB at 3875.187 kb on - strand, within yidB at 3875.221 kb on + strand, within yidB at 3875.239 kb on - strand, within yidB at 3875.318 kb on + strand, within yidB at 3875.361 kb on - strand, within yidB at 3875.361 kb on - strand, within yidB at 3875.470 kb on + strand at 3875.495 kb on + strand at 3875.496 kb on + strand at 3875.681 kb on + strand at 3875.686 kb on + strand at 3875.686 kb on + strand at 3875.717 kb on + strand at 3875.717 kb on + strand at 3875.717 kb on + strand at 3875.725 kb on - strand at 3875.725 kb on - strand at 3875.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Phenazine ethosulfate 0.000125 mM remove 3,874,096 + +0.1 3,874,128 + +1.5 3,874,128 + +1.7 3,874,152 - -0.1 3,874,161 + +0.2 3,874,169 + -0.9 3,874,201 - +0.4 3,874,210 - +0.6 3,874,210 - +0.9 3,874,255 - yidA b3697 0.11 -3.0 3,874,255 - yidA b3697 0.11 +0.9 3,874,270 - yidA b3697 0.13 -1.4 3,874,271 - yidA b3697 0.13 +0.2 3,874,273 + yidA b3697 0.14 -0.9 3,874,275 - yidA b3697 0.14 +0.1 3,874,275 - yidA b3697 0.14 +1.1 3,874,282 + yidA b3697 0.15 +1.0 3,874,350 - yidA b3697 0.23 +0.7 3,874,440 + yidA b3697 0.34 -0.2 3,874,448 - yidA b3697 0.35 +0.8 3,874,465 + yidA b3697 0.37 +0.7 3,874,478 + yidA b3697 0.39 -0.1 3,874,478 + yidA b3697 0.39 -1.3 3,874,483 + yidA b3697 0.39 +0.5 3,874,518 + yidA b3697 0.44 +0.3 3,874,523 - yidA b3697 0.44 +1.1 3,874,523 - yidA b3697 0.44 -0.6 3,874,530 + yidA b3697 0.45 -0.5 3,874,530 + yidA b3697 0.45 -1.5 3,874,557 + yidA b3697 0.48 -0.3 3,874,564 - yidA b3697 0.49 +0.4 3,874,591 - yidA b3697 0.53 +0.3 3,874,591 - yidA b3697 0.53 +0.2 3,874,597 - yidA b3697 0.53 +0.6 3,874,597 - yidA b3697 0.53 +1.0 3,874,599 + yidA b3697 0.54 +0.2 3,874,617 + yidA b3697 0.56 +0.6 3,874,633 + yidA b3697 0.58 -0.1 3,874,633 + yidA b3697 0.58 -0.5 3,874,639 - yidA b3697 0.59 -0.2 3,874,643 + yidA b3697 0.59 +0.8 3,874,643 + yidA b3697 0.59 -0.6 3,874,651 - yidA b3697 0.60 -0.9 3,874,651 - yidA b3697 0.60 +0.9 3,874,651 - yidA b3697 0.60 -1.1 3,874,651 - yidA b3697 0.60 +0.2 3,874,651 - yidA b3697 0.60 -2.5 3,874,657 + yidA b3697 0.61 +0.7 3,874,657 + yidA b3697 0.61 +0.5 3,874,710 - yidA b3697 0.67 +0.6 3,874,739 - yidA b3697 0.71 -0.1 3,874,739 - yidA b3697 0.71 -1.1 3,874,739 - yidA b3697 0.71 +0.8 3,874,739 - yidA b3697 0.71 +0.3 3,874,739 - yidA b3697 0.71 +0.5 3,874,748 + yidA b3697 0.72 +0.2 3,874,753 + yidA b3697 0.73 -0.1 3,874,753 + yidA b3697 0.73 +1.6 3,874,785 + yidA b3697 0.77 -0.7 3,874,792 + yidA b3697 0.77 -1.4 3,874,803 - yidA b3697 0.79 -0.5 3,874,820 + yidA b3697 0.81 -1.2 3,874,828 - yidA b3697 0.82 -0.6 3,874,833 + yidA b3697 0.82 -0.2 3,874,833 + yidA b3697 0.82 -0.0 3,874,916 + -0.5 3,874,916 + +0.3 3,874,926 + -0.2 3,874,928 + +1.1 3,874,928 + -0.2 3,874,930 + +2.5 3,874,930 + -0.2 3,874,938 + +0.8 3,875,003 - -1.5 3,875,003 - -0.1 3,875,020 - +0.4 3,875,043 - -1.3 3,875,172 + yidB b3698 0.21 +2.3 3,875,172 + yidB b3698 0.21 -1.7 3,875,187 - yidB b3698 0.24 +1.0 3,875,221 + yidB b3698 0.33 +0.5 3,875,239 - yidB b3698 0.37 -0.0 3,875,318 + yidB b3698 0.57 +1.2 3,875,361 - yidB b3698 0.68 -0.0 3,875,361 - yidB b3698 0.68 -0.9 3,875,470 + +0.2 3,875,495 + -3.7 3,875,496 + -1.8 3,875,681 + -1.0 3,875,686 + -1.7 3,875,686 + -0.6 3,875,717 + -0.4 3,875,717 + +0.8 3,875,717 + +0.3 3,875,725 - +0.5 3,875,725 - -3.0 3,875,725 - -1.9
Or see this region's nucleotide sequence