Experiment: LB Anaerobic with Phenazine ethosulfate 0.000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhjC and yhjD are separated by 48 nucleotides yhjD and yhjE are separated by 410 nucleotides
b3521: yhjC - predicted DNA-binding transcriptional regulator (RefSeq), at 3,670,437 to 3,671,336
yhjC
b3522: yhjD - conserved inner membrane protein (NCBI), at 3,671,385 to 3,672,398
yhjD
b3523: yhjE - predicted transporter (NCBI), at 3,672,809 to 3,674,131
yhjE
Position (kb)
3671
3672
3673 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3670.518 kb on + strand at 3670.518 kb on + strand at 3670.543 kb on + strand, within yhjC at 3670.560 kb on - strand, within yhjC at 3670.620 kb on - strand, within yhjC at 3670.701 kb on + strand, within yhjC at 3670.733 kb on + strand, within yhjC at 3670.758 kb on - strand, within yhjC at 3670.811 kb on + strand, within yhjC at 3670.819 kb on - strand, within yhjC at 3670.839 kb on + strand, within yhjC at 3670.839 kb on + strand, within yhjC at 3670.893 kb on + strand, within yhjC at 3670.950 kb on + strand, within yhjC at 3670.983 kb on + strand, within yhjC at 3671.006 kb on + strand, within yhjC at 3671.006 kb on + strand, within yhjC at 3671.006 kb on + strand, within yhjC at 3671.007 kb on - strand, within yhjC at 3671.008 kb on + strand, within yhjC at 3671.008 kb on + strand, within yhjC at 3671.008 kb on + strand, within yhjC at 3671.024 kb on - strand, within yhjC at 3671.026 kb on + strand, within yhjC at 3671.026 kb on + strand, within yhjC at 3671.038 kb on - strand, within yhjC at 3671.038 kb on - strand, within yhjC at 3671.040 kb on + strand, within yhjC at 3671.040 kb on + strand, within yhjC at 3671.074 kb on + strand, within yhjC at 3671.074 kb on + strand, within yhjC at 3671.097 kb on + strand, within yhjC at 3671.097 kb on + strand, within yhjC at 3671.184 kb on - strand, within yhjC at 3671.281 kb on + strand at 3671.324 kb on + strand at 3671.324 kb on - strand at 3671.324 kb on - strand at 3671.333 kb on - strand at 3671.333 kb on - strand at 3671.333 kb on - strand at 3671.358 kb on + strand at 3671.358 kb on + strand at 3671.450 kb on + strand at 3671.492 kb on - strand, within yhjD at 3671.503 kb on - strand, within yhjD at 3671.503 kb on - strand, within yhjD at 3671.556 kb on + strand, within yhjD at 3671.586 kb on - strand, within yhjD at 3671.597 kb on + strand, within yhjD at 3671.662 kb on + strand, within yhjD at 3671.865 kb on - strand, within yhjD at 3671.891 kb on - strand, within yhjD at 3671.923 kb on - strand, within yhjD at 3672.046 kb on + strand, within yhjD at 3672.069 kb on + strand, within yhjD at 3672.096 kb on + strand, within yhjD at 3672.226 kb on + strand, within yhjD at 3672.232 kb on - strand, within yhjD at 3672.232 kb on - strand, within yhjD at 3672.233 kb on - strand, within yhjD at 3672.279 kb on + strand, within yhjD at 3672.279 kb on + strand, within yhjD at 3672.288 kb on - strand, within yhjD at 3672.288 kb on - strand, within yhjD at 3672.326 kb on + strand at 3672.336 kb on + strand at 3672.416 kb on + strand at 3672.435 kb on - strand at 3672.459 kb on + strand at 3672.466 kb on - strand at 3672.501 kb on - strand at 3672.514 kb on - strand at 3672.586 kb on - strand at 3672.820 kb on + strand at 3672.823 kb on + strand at 3672.824 kb on + strand at 3672.944 kb on - strand, within yhjE at 3672.944 kb on - strand, within yhjE at 3673.041 kb on + strand, within yhjE at 3673.133 kb on + strand, within yhjE at 3673.133 kb on + strand, within yhjE at 3673.145 kb on - strand, within yhjE at 3673.238 kb on - strand, within yhjE at 3673.281 kb on + strand, within yhjE at 3673.289 kb on - strand, within yhjE at 3673.289 kb on - strand, within yhjE at 3673.289 kb on - strand, within yhjE at 3673.297 kb on - strand, within yhjE at 3673.297 kb on - strand, within yhjE at 3673.299 kb on - strand, within yhjE at 3673.299 kb on - strand, within yhjE at 3673.299 kb on - strand, within yhjE at 3673.299 kb on - strand, within yhjE at 3673.299 kb on - strand, within yhjE at 3673.299 kb on - strand, within yhjE at 3673.310 kb on - strand, within yhjE at 3673.310 kb on - strand, within yhjE
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Phenazine ethosulfate 0.000125 mM remove 3,670,518 + -0.8 3,670,518 + -0.0 3,670,543 + yhjC b3521 0.12 +0.5 3,670,560 - yhjC b3521 0.14 -1.5 3,670,620 - yhjC b3521 0.20 -0.5 3,670,701 + yhjC b3521 0.29 -0.0 3,670,733 + yhjC b3521 0.33 -0.9 3,670,758 - yhjC b3521 0.36 +0.5 3,670,811 + yhjC b3521 0.42 -2.0 3,670,819 - yhjC b3521 0.42 +0.0 3,670,839 + yhjC b3521 0.45 -1.2 3,670,839 + yhjC b3521 0.45 -2.6 3,670,893 + yhjC b3521 0.51 -1.3 3,670,950 + yhjC b3521 0.57 -1.1 3,670,983 + yhjC b3521 0.61 -0.0 3,671,006 + yhjC b3521 0.63 -0.7 3,671,006 + yhjC b3521 0.63 +0.3 3,671,006 + yhjC b3521 0.63 +0.1 3,671,007 - yhjC b3521 0.63 +0.3 3,671,008 + yhjC b3521 0.63 +1.7 3,671,008 + yhjC b3521 0.63 +1.0 3,671,008 + yhjC b3521 0.63 +0.2 3,671,024 - yhjC b3521 0.65 +0.2 3,671,026 + yhjC b3521 0.65 +0.3 3,671,026 + yhjC b3521 0.65 -1.5 3,671,038 - yhjC b3521 0.67 +1.8 3,671,038 - yhjC b3521 0.67 +0.2 3,671,040 + yhjC b3521 0.67 -1.0 3,671,040 + yhjC b3521 0.67 -1.4 3,671,074 + yhjC b3521 0.71 -1.2 3,671,074 + yhjC b3521 0.71 -0.1 3,671,097 + yhjC b3521 0.73 -0.9 3,671,097 + yhjC b3521 0.73 -0.0 3,671,184 - yhjC b3521 0.83 -0.8 3,671,281 + +0.9 3,671,324 + +1.1 3,671,324 - +1.0 3,671,324 - +0.0 3,671,333 - +0.5 3,671,333 - +0.9 3,671,333 - -1.5 3,671,358 + +0.6 3,671,358 + +0.8 3,671,450 + +0.0 3,671,492 - yhjD b3522 0.11 +1.1 3,671,503 - yhjD b3522 0.12 +0.1 3,671,503 - yhjD b3522 0.12 +1.5 3,671,556 + yhjD b3522 0.17 +1.0 3,671,586 - yhjD b3522 0.20 +0.6 3,671,597 + yhjD b3522 0.21 -0.0 3,671,662 + yhjD b3522 0.27 -2.4 3,671,865 - yhjD b3522 0.47 +0.6 3,671,891 - yhjD b3522 0.50 +0.9 3,671,923 - yhjD b3522 0.53 +0.5 3,672,046 + yhjD b3522 0.65 +0.7 3,672,069 + yhjD b3522 0.67 +0.1 3,672,096 + yhjD b3522 0.70 +0.7 3,672,226 + yhjD b3522 0.83 -0.5 3,672,232 - yhjD b3522 0.84 +1.1 3,672,232 - yhjD b3522 0.84 +0.5 3,672,233 - yhjD b3522 0.84 +1.6 3,672,279 + yhjD b3522 0.88 +0.7 3,672,279 + yhjD b3522 0.88 +0.5 3,672,288 - yhjD b3522 0.89 -0.4 3,672,288 - yhjD b3522 0.89 +0.2 3,672,326 + +0.1 3,672,336 + +1.3 3,672,416 + -0.9 3,672,435 - -0.4 3,672,459 + -0.2 3,672,466 - -0.6 3,672,501 - +0.9 3,672,514 - +0.9 3,672,586 - +0.5 3,672,820 + +1.3 3,672,823 + -0.2 3,672,824 + -0.3 3,672,944 - yhjE b3523 0.10 -1.0 3,672,944 - yhjE b3523 0.10 -0.1 3,673,041 + yhjE b3523 0.18 -1.3 3,673,133 + yhjE b3523 0.24 +0.4 3,673,133 + yhjE b3523 0.24 -0.6 3,673,145 - yhjE b3523 0.25 +0.3 3,673,238 - yhjE b3523 0.32 +0.3 3,673,281 + yhjE b3523 0.36 +0.1 3,673,289 - yhjE b3523 0.36 -0.1 3,673,289 - yhjE b3523 0.36 +0.4 3,673,289 - yhjE b3523 0.36 -0.2 3,673,297 - yhjE b3523 0.37 +0.4 3,673,297 - yhjE b3523 0.37 -0.4 3,673,299 - yhjE b3523 0.37 +0.1 3,673,299 - yhjE b3523 0.37 -0.0 3,673,299 - yhjE b3523 0.37 +0.7 3,673,299 - yhjE b3523 0.37 -0.8 3,673,299 - yhjE b3523 0.37 +0.2 3,673,299 - yhjE b3523 0.37 -0.5 3,673,310 - yhjE b3523 0.38 -0.3 3,673,310 - yhjE b3523 0.38 -1.1
Or see this region's nucleotide sequence