Experiment: LB Anaerobic with Phenazine ethosulfate 0.000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1329 and ynaI are separated by 50 nucleotides ynaI and insH-4 are separated by 153 nucleotides
b1329: b1329 - putative transport periplasmic protein (VIMSS), at 1,391,251 to 1,392,864
b1329
b1330: ynaI - conserved inner membrane protein (NCBI), at 1,392,915 to 1,393,946
ynaI
b1331: insH-4 - IS5 transposase and trans-activator (NCBI), at 1,394,100 to 1,395,116
insH-4
Position (kb)
1392
1393
1394 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1391.972 kb on - strand, within b1329 at 1392.009 kb on + strand, within b1329 at 1392.099 kb on + strand, within b1329 at 1392.099 kb on + strand, within b1329 at 1392.107 kb on - strand, within b1329 at 1392.107 kb on - strand, within b1329 at 1392.133 kb on - strand, within b1329 at 1392.186 kb on - strand, within b1329 at 1392.197 kb on - strand, within b1329 at 1392.203 kb on + strand, within b1329 at 1392.205 kb on - strand, within b1329 at 1392.211 kb on - strand, within b1329 at 1392.234 kb on - strand, within b1329 at 1392.255 kb on + strand, within b1329 at 1392.263 kb on + strand, within b1329 at 1392.295 kb on + strand, within b1329 at 1392.317 kb on + strand, within b1329 at 1392.317 kb on + strand, within b1329 at 1392.440 kb on + strand, within b1329 at 1392.511 kb on + strand, within b1329 at 1392.549 kb on + strand, within b1329 at 1392.549 kb on + strand, within b1329 at 1392.558 kb on + strand, within b1329 at 1392.558 kb on + strand, within b1329 at 1392.558 kb on + strand, within b1329 at 1392.650 kb on + strand, within b1329 at 1392.674 kb on - strand, within b1329 at 1392.734 kb on + strand at 1392.734 kb on + strand at 1392.806 kb on - strand at 1392.837 kb on - strand at 1392.846 kb on + strand at 1392.853 kb on - strand at 1392.866 kb on - strand at 1392.873 kb on + strand at 1392.882 kb on + strand at 1392.884 kb on + strand at 1392.887 kb on + strand at 1392.892 kb on - strand at 1392.892 kb on - strand at 1392.895 kb on - strand at 1392.895 kb on - strand at 1392.957 kb on - strand at 1392.964 kb on - strand at 1392.971 kb on - strand at 1392.985 kb on + strand at 1392.985 kb on + strand at 1392.985 kb on + strand at 1392.993 kb on - strand at 1393.040 kb on + strand, within ynaI at 1393.048 kb on + strand, within ynaI at 1393.048 kb on + strand, within ynaI at 1393.049 kb on - strand, within ynaI at 1393.051 kb on - strand, within ynaI at 1393.140 kb on + strand, within ynaI at 1393.175 kb on - strand, within ynaI at 1393.245 kb on - strand, within ynaI at 1393.256 kb on + strand, within ynaI at 1393.265 kb on + strand, within ynaI at 1393.522 kb on - strand, within ynaI at 1393.522 kb on - strand, within ynaI at 1393.537 kb on - strand, within ynaI at 1393.537 kb on - strand, within ynaI at 1393.613 kb on + strand, within ynaI at 1393.617 kb on - strand, within ynaI at 1393.783 kb on - strand, within ynaI at 1393.932 kb on - strand at 1393.932 kb on - strand at 1393.998 kb on - strand at 1394.038 kb on - strand at 1394.070 kb on - strand at 1394.070 kb on - strand at 1394.070 kb on - strand at 1394.070 kb on - strand at 1394.071 kb on - strand at 1394.071 kb on - strand at 1394.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Phenazine ethosulfate 0.000125 mM remove 1,391,972 - b1329 b1329 0.45 -3.0 1,392,009 + b1329 b1329 0.47 +0.0 1,392,099 + b1329 b1329 0.53 +0.9 1,392,099 + b1329 b1329 0.53 +0.6 1,392,107 - b1329 b1329 0.53 +1.6 1,392,107 - b1329 b1329 0.53 +0.6 1,392,133 - b1329 b1329 0.55 +0.0 1,392,186 - b1329 b1329 0.58 +1.6 1,392,197 - b1329 b1329 0.59 +1.6 1,392,203 + b1329 b1329 0.59 -1.2 1,392,205 - b1329 b1329 0.59 +1.6 1,392,211 - b1329 b1329 0.59 +0.6 1,392,234 - b1329 b1329 0.61 -1.2 1,392,255 + b1329 b1329 0.62 +0.0 1,392,263 + b1329 b1329 0.63 +1.8 1,392,295 + b1329 b1329 0.65 -0.6 1,392,317 + b1329 b1329 0.66 -1.0 1,392,317 + b1329 b1329 0.66 -1.8 1,392,440 + b1329 b1329 0.74 -1.0 1,392,511 + b1329 b1329 0.78 +0.2 1,392,549 + b1329 b1329 0.80 -2.5 1,392,549 + b1329 b1329 0.80 +0.0 1,392,558 + b1329 b1329 0.81 -1.6 1,392,558 + b1329 b1329 0.81 +0.6 1,392,558 + b1329 b1329 0.81 -1.6 1,392,650 + b1329 b1329 0.87 -2.1 1,392,674 - b1329 b1329 0.88 +1.6 1,392,734 + -0.7 1,392,734 + +0.0 1,392,806 - -1.2 1,392,837 - +0.0 1,392,846 + +0.9 1,392,853 - +1.6 1,392,866 - -1.0 1,392,873 + +1.6 1,392,882 + +0.6 1,392,884 + +1.6 1,392,887 + +1.6 1,392,892 - +1.2 1,392,892 - -0.4 1,392,895 - -0.4 1,392,895 - -0.4 1,392,957 - -0.1 1,392,964 - -0.7 1,392,971 - -1.0 1,392,985 + +0.6 1,392,985 + +0.6 1,392,985 + +1.6 1,392,993 - -0.0 1,393,040 + ynaI b1330 0.12 +0.6 1,393,048 + ynaI b1330 0.13 +0.0 1,393,048 + ynaI b1330 0.13 +0.6 1,393,049 - ynaI b1330 0.13 -0.6 1,393,051 - ynaI b1330 0.13 -0.7 1,393,140 + ynaI b1330 0.22 +0.6 1,393,175 - ynaI b1330 0.25 -2.3 1,393,245 - ynaI b1330 0.32 -0.3 1,393,256 + ynaI b1330 0.33 +0.6 1,393,265 + ynaI b1330 0.34 +1.6 1,393,522 - ynaI b1330 0.59 +0.6 1,393,522 - ynaI b1330 0.59 +0.6 1,393,537 - ynaI b1330 0.60 -0.7 1,393,537 - ynaI b1330 0.60 +0.0 1,393,613 + ynaI b1330 0.68 +0.6 1,393,617 - ynaI b1330 0.68 +0.6 1,393,783 - ynaI b1330 0.84 +0.0 1,393,932 - -0.0 1,393,932 - -0.8 1,393,998 - -1.4 1,394,038 - +1.3 1,394,070 - -0.6 1,394,070 - +0.4 1,394,070 - -0.4 1,394,070 - -1.1 1,394,071 - +0.0 1,394,071 - +0.2 1,394,083 - -0.8
Or see this region's nucleotide sequence