Experiment: LB Anaerobic with Phenazine ethosulfate 0.000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dhaM and dhaL are separated by 10 nucleotides dhaL and b1200 are separated by 10 nucleotides b1200 and b1201 are separated by 227 nucleotides
b1198: dhaM - fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq), at 1,246,919 to 1,248,337
dhaM
b1199: dhaL - dihydroxyacetone kinase, C-terminal domain (NCBI), at 1,248,348 to 1,248,980
dhaL
b1200: b1200 - putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS), at 1,248,991 to 1,250,061
b1200
b1201: b1201 - putative sensor-type regulator (VIMSS), at 1,250,289 to 1,252,208
b1201
Position (kb)
1248
1249
1250
1251 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1248.025 kb on + strand, within dhaM at 1248.120 kb on + strand, within dhaM at 1248.131 kb on - strand, within dhaM at 1248.142 kb on + strand, within dhaM at 1248.251 kb on + strand at 1248.251 kb on + strand at 1248.305 kb on + strand at 1248.472 kb on + strand, within dhaL at 1248.497 kb on - strand, within dhaL at 1248.512 kb on - strand, within dhaL at 1248.571 kb on + strand, within dhaL at 1248.907 kb on - strand, within dhaL at 1248.907 kb on - strand, within dhaL at 1248.967 kb on + strand at 1249.100 kb on + strand, within b1200 at 1249.100 kb on + strand, within b1200 at 1249.132 kb on + strand, within b1200 at 1249.317 kb on + strand, within b1200 at 1249.446 kb on + strand, within b1200 at 1249.487 kb on - strand, within b1200 at 1249.531 kb on + strand, within b1200 at 1249.539 kb on - strand, within b1200 at 1249.544 kb on - strand, within b1200 at 1249.544 kb on - strand, within b1200 at 1249.612 kb on - strand, within b1200 at 1249.710 kb on - strand, within b1200 at 1249.761 kb on + strand, within b1200 at 1249.761 kb on + strand, within b1200 at 1249.792 kb on + strand, within b1200 at 1249.978 kb on - strand at 1250.384 kb on + strand at 1250.384 kb on + strand at 1250.389 kb on + strand at 1250.426 kb on - strand at 1250.464 kb on - strand at 1250.466 kb on + strand at 1250.468 kb on + strand at 1250.567 kb on - strand, within b1201 at 1250.777 kb on + strand, within b1201 at 1250.780 kb on + strand, within b1201 at 1250.780 kb on + strand, within b1201 at 1251.041 kb on + strand, within b1201 at 1251.045 kb on + strand, within b1201 at 1251.045 kb on + strand, within b1201
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Phenazine ethosulfate 0.000125 mM remove 1,248,025 + dhaM b1198 0.78 +1.6 1,248,120 + dhaM b1198 0.85 -1.5 1,248,131 - dhaM b1198 0.85 -1.0 1,248,142 + dhaM b1198 0.86 +0.8 1,248,251 + +0.5 1,248,251 + +2.1 1,248,305 + -0.5 1,248,472 + dhaL b1199 0.20 +1.1 1,248,497 - dhaL b1199 0.24 -1.0 1,248,512 - dhaL b1199 0.26 +0.0 1,248,571 + dhaL b1199 0.35 -0.4 1,248,907 - dhaL b1199 0.88 -0.0 1,248,907 - dhaL b1199 0.88 +2.0 1,248,967 + +1.0 1,249,100 + b1200 b1200 0.10 -0.3 1,249,100 + b1200 b1200 0.10 -0.4 1,249,132 + b1200 b1200 0.13 -1.4 1,249,317 + b1200 b1200 0.30 +1.0 1,249,446 + b1200 b1200 0.42 -1.8 1,249,487 - b1200 b1200 0.46 +0.7 1,249,531 + b1200 b1200 0.50 +0.6 1,249,539 - b1200 b1200 0.51 +1.2 1,249,544 - b1200 b1200 0.52 +0.9 1,249,544 - b1200 b1200 0.52 +0.7 1,249,612 - b1200 b1200 0.58 +1.2 1,249,710 - b1200 b1200 0.67 +0.8 1,249,761 + b1200 b1200 0.72 +1.6 1,249,761 + b1200 b1200 0.72 -0.9 1,249,792 + b1200 b1200 0.75 +0.3 1,249,978 - -0.9 1,250,384 + -2.0 1,250,384 + -0.3 1,250,389 + -2.6 1,250,426 - +0.6 1,250,464 - +0.1 1,250,466 + -1.9 1,250,468 + -1.3 1,250,567 - b1201 b1201 0.14 +0.8 1,250,777 + b1201 b1201 0.25 +0.5 1,250,780 + b1201 b1201 0.26 +0.1 1,250,780 + b1201 b1201 0.26 -0.0 1,251,041 + b1201 b1201 0.39 -1.2 1,251,045 + b1201 b1201 0.39 -0.7 1,251,045 + b1201 b1201 0.39 -0.4
Or see this region's nucleotide sequence