Experiment: LB Anaerobic with Phenazine ethosulfate 0.000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyoB and cyoA are separated by 21 nucleotides cyoA and ampG are separated by 459 nucleotides
b0431: cyoB - cytochrome o ubiquinol oxidase subunit I (NCBI), at 447,874 to 449,865
cyoB
b0432: cyoA - cytochrome o ubiquinol oxidase subunit II (NCBI), at 449,887 to 450,834
cyoA
b0433: ampG - muropeptide transporter (NCBI), at 451,294 to 452,769
ampG
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 449.038 kb on + strand, within cyoB at 449.041 kb on - strand, within cyoB at 449.053 kb on - strand, within cyoB at 449.056 kb on - strand, within cyoB at 449.098 kb on + strand, within cyoB at 449.098 kb on + strand, within cyoB at 449.135 kb on + strand, within cyoB at 449.169 kb on + strand, within cyoB at 449.169 kb on + strand, within cyoB at 449.202 kb on + strand at 449.210 kb on - strand, within cyoB at 449.210 kb on - strand, within cyoB at 449.278 kb on + strand, within cyoB at 449.299 kb on + strand, within cyoB at 449.299 kb on + strand, within cyoB at 449.323 kb on + strand, within cyoB at 449.330 kb on + strand, within cyoB at 449.438 kb on - strand, within cyoB at 449.580 kb on - strand, within cyoB at 449.631 kb on + strand, within cyoB at 449.681 kb on + strand at 449.686 kb on - strand at 449.686 kb on - strand at 449.690 kb on + strand at 449.711 kb on + strand at 449.729 kb on + strand at 449.756 kb on + strand at 449.773 kb on - strand at 449.773 kb on - strand at 449.776 kb on + strand at 449.783 kb on - strand at 449.785 kb on + strand at 449.785 kb on + strand at 449.817 kb on + strand at 449.830 kb on + strand at 449.848 kb on - strand at 449.882 kb on + strand at 449.882 kb on + strand at 449.892 kb on - strand at 449.892 kb on - strand at 449.893 kb on + strand at 449.893 kb on + strand at 449.893 kb on + strand at 449.908 kb on + strand at 449.908 kb on + strand at 449.908 kb on + strand at 449.908 kb on + strand at 449.916 kb on - strand at 449.975 kb on + strand at 449.976 kb on - strand at 449.977 kb on - strand at 449.977 kb on - strand at 449.983 kb on - strand, within cyoA at 449.983 kb on - strand, within cyoA at 449.983 kb on - strand, within cyoA at 449.987 kb on + strand, within cyoA at 450.027 kb on - strand, within cyoA at 450.047 kb on + strand, within cyoA at 450.112 kb on - strand, within cyoA at 450.178 kb on - strand, within cyoA at 450.201 kb on - strand, within cyoA at 450.221 kb on - strand, within cyoA at 450.221 kb on - strand, within cyoA at 450.344 kb on + strand, within cyoA at 450.344 kb on + strand, within cyoA at 450.353 kb on + strand, within cyoA at 450.359 kb on - strand, within cyoA at 450.367 kb on - strand, within cyoA at 450.367 kb on - strand, within cyoA at 450.397 kb on + strand, within cyoA at 450.423 kb on - strand, within cyoA at 450.432 kb on - strand, within cyoA at 450.452 kb on - strand, within cyoA at 450.452 kb on - strand, within cyoA at 450.463 kb on + strand, within cyoA at 450.497 kb on - strand, within cyoA at 450.514 kb on + strand, within cyoA at 450.522 kb on + strand, within cyoA at 450.546 kb on - strand, within cyoA at 450.553 kb on + strand, within cyoA at 450.562 kb on - strand, within cyoA at 450.562 kb on - strand, within cyoA at 450.575 kb on + strand, within cyoA at 450.581 kb on - strand, within cyoA at 450.597 kb on + strand, within cyoA at 450.601 kb on + strand, within cyoA at 450.601 kb on - strand, within cyoA at 450.673 kb on - strand, within cyoA at 450.687 kb on + strand, within cyoA at 450.702 kb on + strand, within cyoA at 450.707 kb on + strand, within cyoA at 450.710 kb on - strand, within cyoA at 450.715 kb on - strand, within cyoA at 450.718 kb on + strand, within cyoA at 450.725 kb on - strand, within cyoA at 450.730 kb on - strand, within cyoA at 450.730 kb on - strand, within cyoA at 450.753 kb on - strand at 450.763 kb on - strand at 450.769 kb on + strand at 450.769 kb on + strand at 450.774 kb on + strand at 450.777 kb on - strand at 450.779 kb on - strand at 450.779 kb on - strand at 450.782 kb on - strand at 450.782 kb on - strand at 450.792 kb on + strand at 450.863 kb on - strand at 450.863 kb on - strand at 450.874 kb on + strand at 450.874 kb on - strand at 450.893 kb on - strand at 450.904 kb on - strand at 450.904 kb on - strand at 450.950 kb on + strand at 450.954 kb on + strand at 450.954 kb on + strand at 450.957 kb on - strand at 450.973 kb on - strand at 450.996 kb on + strand at 451.004 kb on - strand at 451.021 kb on - strand at 451.023 kb on + strand at 451.026 kb on + strand at 451.041 kb on - strand at 451.041 kb on - strand at 451.044 kb on - strand at 451.213 kb on + strand at 451.277 kb on - strand at 451.325 kb on - strand at 451.328 kb on - strand at 451.328 kb on - strand at 451.347 kb on - strand at 451.386 kb on - strand at 451.386 kb on - strand at 451.394 kb on - strand at 451.402 kb on + strand at 451.403 kb on - strand at 451.449 kb on + strand, within ampG at 451.449 kb on + strand, within ampG at 451.466 kb on - strand, within ampG at 451.483 kb on - strand, within ampG at 451.590 kb on + strand, within ampG at 451.590 kb on + strand, within ampG at 451.596 kb on - strand, within ampG at 451.596 kb on - strand, within ampG at 451.596 kb on - strand, within ampG at 451.598 kb on - strand, within ampG at 451.630 kb on + strand, within ampG at 451.638 kb on - strand, within ampG at 451.683 kb on - strand, within ampG at 451.700 kb on - strand, within ampG at 451.700 kb on - strand, within ampG at 451.702 kb on - strand, within ampG at 451.742 kb on + strand, within ampG at 451.742 kb on + strand, within ampG at 451.742 kb on + strand, within ampG at 451.776 kb on + strand, within ampG at 451.776 kb on + strand, within ampG at 451.778 kb on - strand, within ampG at 451.809 kb on + strand, within ampG at 451.816 kb on + strand, within ampG at 451.816 kb on + strand, within ampG at 451.817 kb on + strand, within ampG at 451.822 kb on - strand, within ampG at 451.822 kb on - strand, within ampG
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Phenazine ethosulfate 0.000125 mM remove 449,038 + cyoB b0431 0.58 +0.3 449,041 - cyoB b0431 0.59 +0.9 449,053 - cyoB b0431 0.59 -0.2 449,056 - cyoB b0431 0.59 +1.5 449,098 + cyoB b0431 0.61 +1.5 449,098 + cyoB b0431 0.61 -1.8 449,135 + cyoB b0431 0.63 -1.3 449,169 + cyoB b0431 0.65 -0.4 449,169 + cyoB b0431 0.65 -1.1 449,202 + +1.7 449,210 - cyoB b0431 0.67 +1.0 449,210 - cyoB b0431 0.67 +2.1 449,278 + cyoB b0431 0.70 +0.1 449,299 + cyoB b0431 0.72 +0.7 449,299 + cyoB b0431 0.72 +0.7 449,323 + cyoB b0431 0.73 +2.0 449,330 + cyoB b0431 0.73 -0.9 449,438 - cyoB b0431 0.79 -1.0 449,580 - cyoB b0431 0.86 +0.4 449,631 + cyoB b0431 0.88 +0.5 449,681 + +1.1 449,686 - +1.2 449,686 - +1.6 449,690 + +0.6 449,711 + +0.0 449,729 + +0.5 449,756 + +0.6 449,773 - +2.3 449,773 - +0.7 449,776 + +1.7 449,783 - +1.4 449,785 + +0.3 449,785 + +2.0 449,817 + +1.5 449,830 + +0.3 449,848 - +1.9 449,882 + +0.7 449,882 + +0.5 449,892 - +0.1 449,892 - +0.4 449,893 + +0.3 449,893 + +3.3 449,893 + +0.6 449,908 + +1.0 449,908 + +0.6 449,908 + -0.1 449,908 + +1.2 449,916 - +0.3 449,975 + -1.6 449,976 - -0.4 449,977 - +1.6 449,977 - +1.5 449,983 - cyoA b0432 0.10 +1.2 449,983 - cyoA b0432 0.10 +0.5 449,983 - cyoA b0432 0.10 -0.1 449,987 + cyoA b0432 0.11 -0.1 450,027 - cyoA b0432 0.15 +0.7 450,047 + cyoA b0432 0.17 -1.1 450,112 - cyoA b0432 0.24 +2.1 450,178 - cyoA b0432 0.31 -0.2 450,201 - cyoA b0432 0.33 +0.3 450,221 - cyoA b0432 0.35 +1.2 450,221 - cyoA b0432 0.35 +0.3 450,344 + cyoA b0432 0.48 -1.1 450,344 + cyoA b0432 0.48 +1.0 450,353 + cyoA b0432 0.49 +0.8 450,359 - cyoA b0432 0.50 +0.1 450,367 - cyoA b0432 0.51 +1.5 450,367 - cyoA b0432 0.51 -0.9 450,397 + cyoA b0432 0.54 +0.2 450,423 - cyoA b0432 0.57 +1.4 450,432 - cyoA b0432 0.57 +0.7 450,452 - cyoA b0432 0.60 +0.8 450,452 - cyoA b0432 0.60 +0.4 450,463 + cyoA b0432 0.61 +0.5 450,497 - cyoA b0432 0.64 +0.5 450,514 + cyoA b0432 0.66 +0.6 450,522 + cyoA b0432 0.67 +1.1 450,546 - cyoA b0432 0.70 +2.2 450,553 + cyoA b0432 0.70 +1.4 450,562 - cyoA b0432 0.71 +1.2 450,562 - cyoA b0432 0.71 +1.2 450,575 + cyoA b0432 0.73 +1.2 450,581 - cyoA b0432 0.73 +1.1 450,597 + cyoA b0432 0.75 +0.2 450,601 + cyoA b0432 0.75 -0.2 450,601 - cyoA b0432 0.75 +0.3 450,673 - cyoA b0432 0.83 +0.6 450,687 + cyoA b0432 0.84 +1.0 450,702 + cyoA b0432 0.86 -0.1 450,707 + cyoA b0432 0.86 -0.1 450,710 - cyoA b0432 0.87 -1.4 450,715 - cyoA b0432 0.87 +0.0 450,718 + cyoA b0432 0.88 -1.4 450,725 - cyoA b0432 0.88 +0.8 450,730 - cyoA b0432 0.89 -0.3 450,730 - cyoA b0432 0.89 +1.0 450,753 - +1.9 450,763 - +1.2 450,769 + +1.7 450,769 + +0.2 450,774 + -0.2 450,777 - +0.4 450,779 - +0.0 450,779 - +1.2 450,782 - +0.2 450,782 - +1.3 450,792 + +1.6 450,863 - +1.6 450,863 - -0.8 450,874 + +0.0 450,874 - +0.5 450,893 - +1.1 450,904 - +0.9 450,904 - -1.3 450,950 + -0.7 450,954 + -0.8 450,954 + -1.1 450,957 - -0.6 450,973 - +0.7 450,996 + -0.3 451,004 - +0.7 451,021 - +0.4 451,023 + -1.0 451,026 + -0.6 451,041 - -0.7 451,041 - +0.2 451,044 - +1.3 451,213 + -1.0 451,277 - +0.4 451,325 - -0.0 451,328 - -1.3 451,328 - -2.6 451,347 - -0.4 451,386 - +0.9 451,386 - +0.7 451,394 - -0.5 451,402 + +2.0 451,403 - +0.2 451,449 + ampG b0433 0.11 -1.5 451,449 + ampG b0433 0.11 -1.2 451,466 - ampG b0433 0.12 -1.1 451,483 - ampG b0433 0.13 +0.9 451,590 + ampG b0433 0.20 +0.8 451,590 + ampG b0433 0.20 -1.5 451,596 - ampG b0433 0.20 +0.2 451,596 - ampG b0433 0.20 -0.6 451,596 - ampG b0433 0.20 +0.0 451,598 - ampG b0433 0.21 +2.0 451,630 + ampG b0433 0.23 +0.4 451,638 - ampG b0433 0.23 -0.6 451,683 - ampG b0433 0.26 +0.4 451,700 - ampG b0433 0.28 -0.1 451,700 - ampG b0433 0.28 +0.9 451,702 - ampG b0433 0.28 -1.0 451,742 + ampG b0433 0.30 -0.8 451,742 + ampG b0433 0.30 -0.5 451,742 + ampG b0433 0.30 -0.0 451,776 + ampG b0433 0.33 +0.9 451,776 + ampG b0433 0.33 -0.7 451,778 - ampG b0433 0.33 +1.0 451,809 + ampG b0433 0.35 -1.8 451,816 + ampG b0433 0.35 +0.9 451,816 + ampG b0433 0.35 +0.6 451,817 + ampG b0433 0.35 -0.2 451,822 - ampG b0433 0.36 +0.5 451,822 - ampG b0433 0.36 -1.4
Or see this region's nucleotide sequence