Experiment: LB, Anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfbS and yfbT are separated by 86 nucleotides yfbT and b2294 are separated by 10 nucleotides b2294 and yfbV are separated by 82 nucleotides
b2292: yfbS - predicted transporter (NCBI), at 2,407,542 to 2,409,374
yfbS
b2293: yfbT - putative phosphatase (VIMSS), at 2,409,461 to 2,410,111
yfbT
b2294: b2294 - orf, hypothetical protein (VIMSS), at 2,410,122 to 2,410,616
b2294
b2295: yfbV - hypothetical protein (NCBI), at 2,410,699 to 2,411,154
yfbV
Position (kb)
2409
2410
2411 Strain fitness (log2 ratio)
-1
0
1 at 2408.494 kb on + strand, within yfbS at 2408.519 kb on - strand, within yfbS at 2408.593 kb on - strand, within yfbS at 2408.736 kb on + strand, within yfbS at 2408.764 kb on - strand, within yfbS at 2408.775 kb on - strand, within yfbS at 2408.818 kb on + strand, within yfbS at 2408.818 kb on + strand, within yfbS at 2408.911 kb on + strand, within yfbS at 2408.911 kb on + strand, within yfbS at 2408.932 kb on - strand, within yfbS at 2409.178 kb on + strand, within yfbS at 2409.178 kb on + strand, within yfbS at 2409.195 kb on + strand at 2409.195 kb on + strand at 2409.208 kb on - strand at 2409.251 kb on - strand at 2409.258 kb on - strand at 2409.513 kb on + strand at 2409.636 kb on + strand, within yfbT at 2409.641 kb on + strand, within yfbT at 2409.913 kb on - strand, within yfbT at 2410.159 kb on + strand at 2410.161 kb on - strand at 2410.287 kb on - strand, within b2294 at 2410.358 kb on + strand, within b2294 at 2410.358 kb on + strand, within b2294 at 2410.426 kb on - strand, within b2294 at 2410.435 kb on - strand, within b2294 at 2410.435 kb on - strand, within b2294 at 2410.467 kb on + strand, within b2294 at 2410.467 kb on + strand, within b2294 at 2410.508 kb on + strand, within b2294 at 2410.538 kb on - strand, within b2294 at 2410.538 kb on - strand, within b2294 at 2410.550 kb on + strand, within b2294 at 2410.561 kb on + strand, within b2294 at 2410.567 kb on + strand at 2410.567 kb on + strand at 2410.618 kb on + strand at 2410.623 kb on + strand at 2410.636 kb on - strand at 2410.636 kb on - strand at 2410.673 kb on + strand at 2410.673 kb on + strand at 2410.726 kb on - strand at 2410.765 kb on - strand, within yfbV at 2410.808 kb on + strand, within yfbV at 2410.808 kb on + strand, within yfbV at 2410.811 kb on - strand, within yfbV at 2410.858 kb on + strand, within yfbV at 2410.864 kb on + strand, within yfbV at 2410.866 kb on - strand, within yfbV at 2410.886 kb on + strand, within yfbV at 2410.934 kb on - strand, within yfbV at 2410.946 kb on - strand, within yfbV at 2410.948 kb on + strand, within yfbV at 2411.001 kb on + strand, within yfbV
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Anaerobic remove 2,408,494 + yfbS b2292 0.52 -0.1 2,408,519 - yfbS b2292 0.53 +1.2 2,408,593 - yfbS b2292 0.57 -0.6 2,408,736 + yfbS b2292 0.65 -1.1 2,408,764 - yfbS b2292 0.67 +0.0 2,408,775 - yfbS b2292 0.67 +0.3 2,408,818 + yfbS b2292 0.70 -0.8 2,408,818 + yfbS b2292 0.70 +0.3 2,408,911 + yfbS b2292 0.75 -1.5 2,408,911 + yfbS b2292 0.75 +1.2 2,408,932 - yfbS b2292 0.76 -0.6 2,409,178 + yfbS b2292 0.89 -0.1 2,409,178 + yfbS b2292 0.89 -1.5 2,409,195 + -0.2 2,409,195 + +0.2 2,409,208 - +0.3 2,409,251 - -0.2 2,409,258 - +0.4 2,409,513 + -0.5 2,409,636 + yfbT b2293 0.27 +1.6 2,409,641 + yfbT b2293 0.28 -0.0 2,409,913 - yfbT b2293 0.69 -0.6 2,410,159 + -0.2 2,410,161 - -0.2 2,410,287 - b2294 b2294 0.33 -0.3 2,410,358 + b2294 b2294 0.48 +0.2 2,410,358 + b2294 b2294 0.48 +0.1 2,410,426 - b2294 b2294 0.61 -0.4 2,410,435 - b2294 b2294 0.63 +0.3 2,410,435 - b2294 b2294 0.63 +0.7 2,410,467 + b2294 b2294 0.70 +0.1 2,410,467 + b2294 b2294 0.70 -0.2 2,410,508 + b2294 b2294 0.78 -0.1 2,410,538 - b2294 b2294 0.84 -1.1 2,410,538 - b2294 b2294 0.84 +0.7 2,410,550 + b2294 b2294 0.86 -1.1 2,410,561 + b2294 b2294 0.89 +0.1 2,410,567 + +0.6 2,410,567 + +0.5 2,410,618 + +0.5 2,410,623 + -0.3 2,410,636 - +0.4 2,410,636 - +0.4 2,410,673 + +0.1 2,410,673 + +0.4 2,410,726 - +0.1 2,410,765 - yfbV b2295 0.14 -0.1 2,410,808 + yfbV b2295 0.24 -0.5 2,410,808 + yfbV b2295 0.24 -0.6 2,410,811 - yfbV b2295 0.25 -0.4 2,410,858 + yfbV b2295 0.35 +0.1 2,410,864 + yfbV b2295 0.36 -0.1 2,410,866 - yfbV b2295 0.37 +0.2 2,410,886 + yfbV b2295 0.41 +0.9 2,410,934 - yfbV b2295 0.52 -0.3 2,410,946 - yfbV b2295 0.54 +0.1 2,410,948 + yfbV b2295 0.55 -0.9 2,411,001 + yfbV b2295 0.66 -1.5
Or see this region's nucleotide sequence