Experiment: LB, Anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yciV and yciO overlap by 4 nucleotides yciO and yciQ are separated by 27 nucleotides yciQ and rluB are separated by 210 nucleotides
b1266: yciV - hypothetical protein (NCBI), at 1,321,244 to 1,322,125
yciV
b1267: yciO - orf, hypothetical protein (VIMSS), at 1,322,122 to 1,322,742
yciO
b1268: yciQ - predicted inner membrane protein (NCBI), at 1,322,770 to 1,324,665
yciQ
b1269: rluB - 23S rRNA pseudouridylate synthase (NCBI), at 1,324,876 to 1,325,751
rluB
Position (kb)
1322
1323
1324
1325 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1321.935 kb on - strand, within yciV at 1322.096 kb on + strand at 1322.096 kb on + strand at 1322.161 kb on - strand at 1322.231 kb on + strand, within yciO at 1322.708 kb on + strand at 1322.713 kb on + strand at 1322.766 kb on - strand at 1322.814 kb on + strand at 1322.880 kb on + strand at 1322.880 kb on + strand at 1323.017 kb on + strand, within yciQ at 1323.232 kb on + strand, within yciQ at 1323.240 kb on - strand, within yciQ at 1323.364 kb on + strand, within yciQ at 1323.420 kb on + strand, within yciQ at 1323.420 kb on + strand, within yciQ at 1323.421 kb on + strand, within yciQ at 1323.421 kb on + strand, within yciQ at 1323.428 kb on - strand, within yciQ at 1323.428 kb on - strand, within yciQ at 1323.491 kb on + strand, within yciQ at 1323.543 kb on + strand, within yciQ at 1323.571 kb on - strand, within yciQ at 1323.650 kb on - strand, within yciQ at 1323.742 kb on + strand, within yciQ at 1323.755 kb on - strand, within yciQ at 1323.792 kb on - strand, within yciQ at 1323.819 kb on + strand, within yciQ at 1323.827 kb on - strand, within yciQ at 1323.827 kb on - strand, within yciQ at 1323.849 kb on + strand, within yciQ at 1323.849 kb on + strand, within yciQ at 1323.855 kb on - strand, within yciQ at 1323.881 kb on - strand, within yciQ at 1323.883 kb on + strand, within yciQ at 1323.883 kb on + strand, within yciQ at 1323.891 kb on - strand, within yciQ at 1323.891 kb on - strand, within yciQ at 1323.891 kb on - strand, within yciQ at 1323.891 kb on - strand, within yciQ at 1323.891 kb on - strand, within yciQ at 1324.018 kb on + strand, within yciQ at 1324.018 kb on + strand, within yciQ at 1324.019 kb on - strand, within yciQ at 1324.026 kb on - strand, within yciQ at 1324.131 kb on + strand, within yciQ at 1324.139 kb on - strand, within yciQ at 1324.139 kb on - strand, within yciQ at 1324.235 kb on + strand, within yciQ at 1324.236 kb on + strand, within yciQ at 1324.236 kb on + strand, within yciQ at 1324.243 kb on - strand, within yciQ at 1324.389 kb on + strand, within yciQ at 1324.389 kb on + strand, within yciQ at 1324.398 kb on - strand, within yciQ at 1324.398 kb on - strand, within yciQ at 1324.491 kb on + strand at 1324.821 kb on + strand at 1324.826 kb on + strand at 1324.829 kb on - strand at 1324.829 kb on - strand at 1325.097 kb on + strand, within rluB at 1325.110 kb on + strand, within rluB at 1325.179 kb on + strand, within rluB at 1325.179 kb on + strand, within rluB at 1325.635 kb on - strand, within rluB at 1325.636 kb on - strand, within rluB at 1325.636 kb on - strand, within rluB
Per-strain Table
Position Strand Gene LocusTag Fraction LB, Anaerobic remove 1,321,935 - yciV b1266 0.78 -0.0 1,322,096 + -1.6 1,322,096 + -0.8 1,322,161 - -0.4 1,322,231 + yciO b1267 0.18 +1.4 1,322,708 + -0.7 1,322,713 + -1.1 1,322,766 - -0.8 1,322,814 + +0.6 1,322,880 + -0.4 1,322,880 + +0.4 1,323,017 + yciQ b1268 0.13 -0.6 1,323,232 + yciQ b1268 0.24 -1.2 1,323,240 - yciQ b1268 0.25 +1.8 1,323,364 + yciQ b1268 0.31 -0.0 1,323,420 + yciQ b1268 0.34 +0.8 1,323,420 + yciQ b1268 0.34 -0.8 1,323,421 + yciQ b1268 0.34 -0.2 1,323,421 + yciQ b1268 0.34 -0.6 1,323,428 - yciQ b1268 0.35 +0.2 1,323,428 - yciQ b1268 0.35 +0.2 1,323,491 + yciQ b1268 0.38 +0.8 1,323,543 + yciQ b1268 0.41 -0.1 1,323,571 - yciQ b1268 0.42 -1.0 1,323,650 - yciQ b1268 0.46 -0.2 1,323,742 + yciQ b1268 0.51 -0.1 1,323,755 - yciQ b1268 0.52 +1.8 1,323,792 - yciQ b1268 0.54 +1.8 1,323,819 + yciQ b1268 0.55 -1.8 1,323,827 - yciQ b1268 0.56 +1.8 1,323,827 - yciQ b1268 0.56 +0.8 1,323,849 + yciQ b1268 0.57 +0.4 1,323,849 + yciQ b1268 0.57 -1.6 1,323,855 - yciQ b1268 0.57 -0.2 1,323,881 - yciQ b1268 0.59 +0.2 1,323,883 + yciQ b1268 0.59 -0.4 1,323,883 + yciQ b1268 0.59 +0.2 1,323,891 - yciQ b1268 0.59 +0.8 1,323,891 - yciQ b1268 0.59 +0.8 1,323,891 - yciQ b1268 0.59 +0.2 1,323,891 - yciQ b1268 0.59 +0.2 1,323,891 - yciQ b1268 0.59 +1.8 1,324,018 + yciQ b1268 0.66 -0.4 1,324,018 + yciQ b1268 0.66 -0.6 1,324,019 - yciQ b1268 0.66 +1.8 1,324,026 - yciQ b1268 0.66 -0.4 1,324,131 + yciQ b1268 0.72 +0.8 1,324,139 - yciQ b1268 0.72 +1.8 1,324,139 - yciQ b1268 0.72 +0.8 1,324,235 + yciQ b1268 0.77 -1.2 1,324,236 + yciQ b1268 0.77 -0.8 1,324,236 + yciQ b1268 0.77 -1.3 1,324,243 - yciQ b1268 0.78 +1.8 1,324,389 + yciQ b1268 0.85 +0.7 1,324,389 + yciQ b1268 0.85 +1.0 1,324,398 - yciQ b1268 0.86 -0.8 1,324,398 - yciQ b1268 0.86 +0.1 1,324,491 + -0.1 1,324,821 + -0.7 1,324,826 + -1.3 1,324,829 - +2.8 1,324,829 - +0.4 1,325,097 + rluB b1269 0.25 +0.7 1,325,110 + rluB b1269 0.27 -0.1 1,325,179 + rluB b1269 0.35 +0.0 1,325,179 + rluB b1269 0.35 -2.5 1,325,635 - rluB b1269 0.87 -1.2 1,325,636 - rluB b1269 0.87 +2.2 1,325,636 - rluB b1269 0.87 -1.4
Or see this region's nucleotide sequence