Strain Fitness in Escherichia coli BW25113 around b3817

Experiment: LB Anaerobic with Norfloxacin 0.00000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcorA and yigF are separated by 42 nucleotidesyigF and yigG are separated by 13 nucleotidesyigG and rarD are separated by 94 nucleotides b3816: corA - magnesium/nickel/cobalt transporter (NCBI), at 3,999,449 to 4,000,399 corA b3817: yigF - conserved inner membrane protein (NCBI), at 4,000,442 to 4,000,822 yigF b3818: yigG - orf, hypothetical protein (VIMSS), at 4,000,836 to 4,001,216 yigG b3819: rarD - predicted chloramphenical resistance permease (NCBI), at 4,001,311 to 4,002,201 rarD Position (kb) 4000 4001Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3999.548 kb on - strand, within corAat 3999.582 kb on + strandat 3999.582 kb on + strand, within corAat 3999.584 kb on + strand, within corAat 3999.588 kb on + strand, within corAat 3999.664 kb on + strand, within corAat 3999.664 kb on + strand, within corAat 3999.664 kb on + strand, within corAat 3999.665 kb on + strand, within corAat 3999.665 kb on + strand, within corAat 3999.718 kb on - strand, within corAat 3999.718 kb on - strand, within corAat 3999.723 kb on - strand, within corAat 3999.743 kb on - strand, within corAat 3999.751 kb on + strand, within corAat 3999.758 kb on - strand, within corAat 3999.758 kb on - strand, within corAat 3999.765 kb on + strand, within corAat 3999.768 kb on - strand, within corAat 3999.768 kb on - strand, within corAat 3999.797 kb on - strand, within corAat 3999.797 kb on - strand, within corAat 3999.804 kb on + strand, within corAat 3999.826 kb on + strand, within corAat 3999.877 kb on + strand, within corAat 3999.877 kb on - strand, within corAat 3999.898 kb on + strand, within corAat 3999.898 kb on + strand, within corAat 3999.898 kb on + strand, within corAat 3999.899 kb on + strand, within corAat 3999.958 kb on + strand, within corAat 3999.970 kb on + strand, within corAat 3999.970 kb on + strand, within corAat 3999.978 kb on - strand, within corAat 3999.978 kb on - strand, within corAat 4000.008 kb on + strand, within corAat 4000.019 kb on + strand, within corAat 4000.040 kb on + strand, within corAat 4000.040 kb on + strand, within corAat 4000.077 kb on - strand, within corAat 4000.077 kb on - strand, within corAat 4000.103 kb on + strand, within corAat 4000.147 kb on + strand, within corAat 4000.147 kb on + strand, within corAat 4000.154 kb on + strand, within corAat 4000.202 kb on - strand, within corAat 4000.214 kb on + strand, within corAat 4000.214 kb on + strand, within corAat 4000.232 kb on - strand, within corAat 4000.238 kb on + strand, within corAat 4000.273 kb on - strand, within corAat 4000.275 kb on - strand, within corAat 4000.291 kb on - strand, within corAat 4000.301 kb on + strand, within corAat 4000.340 kb on + strandat 4000.340 kb on + strandat 4000.340 kb on + strandat 4000.369 kb on + strandat 4000.410 kb on + strandat 4000.414 kb on + strandat 4000.415 kb on + strandat 4000.415 kb on - strandat 4000.423 kb on - strandat 4000.430 kb on + strandat 4000.430 kb on + strandat 4000.430 kb on + strandat 4000.437 kb on + strandat 4000.437 kb on + strandat 4000.440 kb on + strandat 4000.445 kb on - strandat 4000.445 kb on - strandat 4000.455 kb on - strandat 4000.459 kb on - strandat 4000.474 kb on - strandat 4000.485 kb on + strand, within yigFat 4000.491 kb on + strand, within yigFat 4000.492 kb on - strand, within yigFat 4000.496 kb on + strand, within yigFat 4000.506 kb on + strand, within yigFat 4000.508 kb on + strand, within yigFat 4000.508 kb on + strand, within yigFat 4000.508 kb on + strand, within yigFat 4000.508 kb on + strand, within yigFat 4000.509 kb on + strand, within yigFat 4000.509 kb on + strand, within yigFat 4000.509 kb on + strand, within yigFat 4000.509 kb on + strand, within yigFat 4000.510 kb on - strand, within yigFat 4000.510 kb on - strand, within yigFat 4000.512 kb on - strand, within yigFat 4000.512 kb on - strand, within yigFat 4000.516 kb on - strand, within yigFat 4000.516 kb on - strand, within yigFat 4000.516 kb on - strand, within yigFat 4000.516 kb on - strand, within yigFat 4000.517 kb on - strand, within yigFat 4000.517 kb on - strand, within yigFat 4000.546 kb on - strand, within yigFat 4000.561 kb on + strand, within yigFat 4000.561 kb on + strand, within yigFat 4000.563 kb on + strand, within yigFat 4000.570 kb on + strand, within yigFat 4000.570 kb on + strand, within yigFat 4000.570 kb on + strand, within yigFat 4000.606 kb on + strand, within yigFat 4000.606 kb on + strand, within yigFat 4000.635 kb on - strand, within yigFat 4000.814 kb on - strandat 4000.867 kb on - strandat 4000.867 kb on - strandat 4000.927 kb on - strand, within yigGat 4001.179 kb on - strandat 4001.185 kb on - strandat 4001.195 kb on - strandat 4001.205 kb on - strandat 4001.232 kb on + strandat 4001.238 kb on - strandat 4001.238 kb on - strandat 4001.238 kb on - strandat 4001.238 kb on - strandat 4001.238 kb on - strandat 4001.238 kb on - strandat 4001.240 kb on - strandat 4001.240 kb on - strandat 4001.242 kb on + strandat 4001.242 kb on + strandat 4001.242 kb on + strandat 4001.242 kb on - strandat 4001.244 kb on + strandat 4001.244 kb on + strandat 4001.250 kb on - strandat 4001.250 kb on - strandat 4001.250 kb on - strandat 4001.252 kb on - strandat 4001.253 kb on + strandat 4001.262 kb on - strandat 4001.262 kb on - strandat 4001.263 kb on - strandat 4001.263 kb on - strandat 4001.263 kb on - strandat 4001.268 kb on + strandat 4001.274 kb on - strandat 4001.276 kb on - strandat 4001.276 kb on - strandat 4001.276 kb on - strandat 4001.276 kb on - strandat 4001.276 kb on - strandat 4001.276 kb on - strandat 4001.277 kb on - strandat 4001.277 kb on - strandat 4001.279 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.329 kb on - strandat 4001.331 kb on - strandat 4001.331 kb on - strandat 4001.338 kb on - strandat 4001.338 kb on - strandat 4001.339 kb on - strandat 4001.339 kb on - strandat 4001.339 kb on - strandat 4001.341 kb on - strandat 4001.341 kb on - strandat 4001.347 kb on + strandat 4001.347 kb on + strandat 4001.372 kb on - strandat 4001.386 kb on - strandat 4001.386 kb on - strandat 4001.387 kb on + strandat 4001.395 kb on + strandat 4001.395 kb on - strandat 4001.403 kb on - strand, within rarDat 4001.417 kb on - strand, within rarDat 4001.448 kb on - strand, within rarDat 4001.453 kb on + strand, within rarDat 4001.453 kb on + strand, within rarDat 4001.461 kb on - strand, within rarDat 4001.461 kb on - strand, within rarDat 4001.467 kb on - strand, within rarDat 4001.467 kb on - strand, within rarDat 4001.467 kb on - strand, within rarDat 4001.469 kb on - strand, within rarDat 4001.474 kb on - strand, within rarDat 4001.478 kb on + strand, within rarDat 4001.485 kb on - strand, within rarDat 4001.486 kb on - strand, within rarDat 4001.486 kb on - strand, within rarDat 4001.530 kb on - strand, within rarDat 4001.530 kb on - strand, within rarDat 4001.533 kb on + strand, within rarDat 4001.533 kb on + strand, within rarDat 4001.586 kb on + strand, within rarDat 4001.597 kb on + strand, within rarDat 4001.597 kb on + strand, within rarDat 4001.597 kb on + strand, within rarDat 4001.605 kb on + strand, within rarDat 4001.605 kb on - strand, within rarDat 4001.613 kb on - strand, within rarDat 4001.615 kb on - strand, within rarDat 4001.615 kb on - strand, within rarDat 4001.650 kb on + strand, within rarDat 4001.653 kb on + strand, within rarDat 4001.654 kb on - strand, within rarDat 4001.662 kb on - strand, within rarDat 4001.687 kb on - strand, within rarDat 4001.687 kb on - strand, within rarDat 4001.695 kb on + strand, within rarDat 4001.698 kb on - strand, within rarDat 4001.700 kb on + strand, within rarDat 4001.700 kb on + strand, within rarDat 4001.700 kb on - strand, within rarDat 4001.701 kb on - strand, within rarDat 4001.703 kb on - strand, within rarDat 4001.708 kb on - strand, within rarDat 4001.709 kb on - strand, within rarDat 4001.709 kb on - strand, within rarDat 4001.711 kb on - strand, within rarDat 4001.771 kb on + strand, within rarDat 4001.779 kb on - strand, within rarDat 4001.779 kb on - strand, within rarDat 4001.780 kb on + strand, within rarDat 4001.781 kb on + strand, within rarDat 4001.783 kb on - strand, within rarD

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Norfloxacin 0.00000015625 mM
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3,999,548 - corA b3816 0.10 +0.4
3,999,582 + +1.1
3,999,582 + corA b3816 0.14 -0.9
3,999,584 + corA b3816 0.14 +0.6
3,999,588 + corA b3816 0.15 -0.4
3,999,664 + corA b3816 0.23 +0.4
3,999,664 + corA b3816 0.23 +0.7
3,999,664 + corA b3816 0.23 +0.6
3,999,665 + corA b3816 0.23 +0.9
3,999,665 + corA b3816 0.23 +1.1
3,999,718 - corA b3816 0.28 +1.3
3,999,718 - corA b3816 0.28 -1.3
3,999,723 - corA b3816 0.29 -0.2
3,999,743 - corA b3816 0.31 +0.6
3,999,751 + corA b3816 0.32 +0.3
3,999,758 - corA b3816 0.32 -0.3
3,999,758 - corA b3816 0.32 -1.7
3,999,765 + corA b3816 0.33 +1.8
3,999,768 - corA b3816 0.34 -1.2
3,999,768 - corA b3816 0.34 +0.6
3,999,797 - corA b3816 0.37 -0.2
3,999,797 - corA b3816 0.37 +0.7
3,999,804 + corA b3816 0.37 -0.4
3,999,826 + corA b3816 0.40 +0.7
3,999,877 + corA b3816 0.45 +0.3
3,999,877 - corA b3816 0.45 +0.6
3,999,898 + corA b3816 0.47 -0.2
3,999,898 + corA b3816 0.47 -1.4
3,999,898 + corA b3816 0.47 +0.9
3,999,899 + corA b3816 0.47 -0.2
3,999,958 + corA b3816 0.54 -0.2
3,999,970 + corA b3816 0.55 +0.6
3,999,970 + corA b3816 0.55 +0.6
3,999,978 - corA b3816 0.56 +0.0
3,999,978 - corA b3816 0.56 +1.1
4,000,008 + corA b3816 0.59 -1.9
4,000,019 + corA b3816 0.60 -0.4
4,000,040 + corA b3816 0.62 +0.8
4,000,040 + corA b3816 0.62 -0.3
4,000,077 - corA b3816 0.66 -0.3
4,000,077 - corA b3816 0.66 +1.1
4,000,103 + corA b3816 0.69 -0.9
4,000,147 + corA b3816 0.73 +0.1
4,000,147 + corA b3816 0.73 +0.9
4,000,154 + corA b3816 0.74 +0.4
4,000,202 - corA b3816 0.79 -0.4
4,000,214 + corA b3816 0.80 -0.7
4,000,214 + corA b3816 0.80 -0.3
4,000,232 - corA b3816 0.82 +1.3
4,000,238 + corA b3816 0.83 +0.9
4,000,273 - corA b3816 0.87 +0.7
4,000,275 - corA b3816 0.87 -1.4
4,000,291 - corA b3816 0.89 +0.8
4,000,301 + corA b3816 0.90 +0.2
4,000,340 + +0.9
4,000,340 + -0.2
4,000,340 + -1.9
4,000,369 + +0.5
4,000,410 + +0.4
4,000,414 + +0.1
4,000,415 + +0.3
4,000,415 - +0.6
4,000,423 - +0.3
4,000,430 + -0.7
4,000,430 + +0.4
4,000,430 + -1.2
4,000,437 + +0.1
4,000,437 + -1.6
4,000,440 + -0.0
4,000,445 - +0.0
4,000,445 - +0.9
4,000,455 - +0.4
4,000,459 - -0.8
4,000,474 - -0.6
4,000,485 + yigF b3817 0.11 +2.3
4,000,491 + yigF b3817 0.13 +0.2
4,000,492 - yigF b3817 0.13 +0.7
4,000,496 + yigF b3817 0.14 +1.5
4,000,506 + yigF b3817 0.17 +1.1
4,000,508 + yigF b3817 0.17 -0.1
4,000,508 + yigF b3817 0.17 -0.8
4,000,508 + yigF b3817 0.17 +0.7
4,000,508 + yigF b3817 0.17 +0.0
4,000,509 + yigF b3817 0.18 -0.7
4,000,509 + yigF b3817 0.18 +0.9
4,000,509 + yigF b3817 0.18 +0.3
4,000,509 + yigF b3817 0.18 -0.4
4,000,510 - yigF b3817 0.18 +0.3
4,000,510 - yigF b3817 0.18 +1.0
4,000,512 - yigF b3817 0.18 +0.1
4,000,512 - yigF b3817 0.18 +0.6
4,000,516 - yigF b3817 0.19 -0.0
4,000,516 - yigF b3817 0.19 +1.0
4,000,516 - yigF b3817 0.19 +0.7
4,000,516 - yigF b3817 0.19 +0.5
4,000,517 - yigF b3817 0.20 -1.2
4,000,517 - yigF b3817 0.20 +0.1
4,000,546 - yigF b3817 0.27 +2.1
4,000,561 + yigF b3817 0.31 -0.0
4,000,561 + yigF b3817 0.31 -0.4
4,000,563 + yigF b3817 0.32 +1.7
4,000,570 + yigF b3817 0.34 +0.4
4,000,570 + yigF b3817 0.34 +0.9
4,000,570 + yigF b3817 0.34 -0.8
4,000,606 + yigF b3817 0.43 +1.1
4,000,606 + yigF b3817 0.43 +2.1
4,000,635 - yigF b3817 0.51 -0.1
4,000,814 - +2.1
4,000,867 - +1.1
4,000,867 - -0.2
4,000,927 - yigG b3818 0.24 +2.1
4,001,179 - +0.8
4,001,185 - +0.1
4,001,195 - +0.4
4,001,205 - -0.3
4,001,232 + +2.1
4,001,238 - +0.4
4,001,238 - -0.5
4,001,238 - -1.5
4,001,238 - -1.3
4,001,238 - +0.2
4,001,238 - -0.4
4,001,240 - -0.6
4,001,240 - -0.3
4,001,242 + +2.1
4,001,242 + +2.1
4,001,242 + +0.6
4,001,242 - -1.9
4,001,244 + +2.1
4,001,244 + +2.1
4,001,250 - +1.0
4,001,250 - +1.6
4,001,250 - -0.2
4,001,252 - +2.1
4,001,253 + +2.1
4,001,262 - +0.7
4,001,262 - +0.2
4,001,263 - -1.2
4,001,263 - +1.1
4,001,263 - +1.1
4,001,268 + +2.1
4,001,274 - -0.0
4,001,276 - +0.1
4,001,276 - +0.6
4,001,276 - +0.0
4,001,276 - +0.6
4,001,276 - +0.5
4,001,276 - -1.2
4,001,277 - -0.4
4,001,277 - -0.2
4,001,279 - +0.5
4,001,329 - +1.0
4,001,329 - -0.5
4,001,329 - +0.0
4,001,329 - -0.6
4,001,329 - +0.9
4,001,329 - -0.8
4,001,329 - +0.2
4,001,329 - +1.6
4,001,329 - -0.5
4,001,329 - -0.4
4,001,329 - +0.2
4,001,329 - +0.3
4,001,329 - -1.1
4,001,329 - +0.9
4,001,329 - -0.4
4,001,329 - -0.4
4,001,329 - -0.3
4,001,329 - +1.3
4,001,329 - +0.7
4,001,329 - -2.3
4,001,329 - +0.6
4,001,329 - +0.1
4,001,331 - -0.7
4,001,331 - +0.7
4,001,338 - +0.3
4,001,338 - +0.3
4,001,339 - -0.0
4,001,339 - +0.7
4,001,339 - +0.5
4,001,341 - -0.1
4,001,341 - -0.3
4,001,347 + +2.1
4,001,347 + +2.1
4,001,372 - -0.5
4,001,386 - -0.2
4,001,386 - +1.0
4,001,387 + +2.1
4,001,395 + +2.1
4,001,395 - -1.4
4,001,403 - rarD b3819 0.10 -1.0
4,001,417 - rarD b3819 0.12 -0.2
4,001,448 - rarD b3819 0.15 +0.7
4,001,453 + rarD b3819 0.16 +1.1
4,001,453 + rarD b3819 0.16 +2.6
4,001,461 - rarD b3819 0.17 +0.5
4,001,461 - rarD b3819 0.17 +0.9
4,001,467 - rarD b3819 0.18 -0.3
4,001,467 - rarD b3819 0.18 +0.3
4,001,467 - rarD b3819 0.18 -0.3
4,001,469 - rarD b3819 0.18 +0.2
4,001,474 - rarD b3819 0.18 -0.5
4,001,478 + rarD b3819 0.19 +2.1
4,001,485 - rarD b3819 0.20 -0.2
4,001,486 - rarD b3819 0.20 -0.5
4,001,486 - rarD b3819 0.20 -0.8
4,001,530 - rarD b3819 0.25 -1.0
4,001,530 - rarD b3819 0.25 +0.3
4,001,533 + rarD b3819 0.25 +0.9
4,001,533 + rarD b3819 0.25 -0.1
4,001,586 + rarD b3819 0.31 -0.7
4,001,597 + rarD b3819 0.32 -1.1
4,001,597 + rarD b3819 0.32 -0.1
4,001,597 + rarD b3819 0.32 -0.4
4,001,605 + rarD b3819 0.33 -1.4
4,001,605 - rarD b3819 0.33 +0.8
4,001,613 - rarD b3819 0.34 -0.2
4,001,615 - rarD b3819 0.34 +1.1
4,001,615 - rarD b3819 0.34 +1.2
4,001,650 + rarD b3819 0.38 -0.4
4,001,653 + rarD b3819 0.38 +3.1
4,001,654 - rarD b3819 0.38 -0.9
4,001,662 - rarD b3819 0.39 -0.7
4,001,687 - rarD b3819 0.42 -1.1
4,001,687 - rarD b3819 0.42 +0.1
4,001,695 + rarD b3819 0.43 -1.7
4,001,698 - rarD b3819 0.43 +0.1
4,001,700 + rarD b3819 0.44 +2.1
4,001,700 + rarD b3819 0.44 +0.6
4,001,700 - rarD b3819 0.44 -0.0
4,001,701 - rarD b3819 0.44 +0.1
4,001,703 - rarD b3819 0.44 +0.2
4,001,708 - rarD b3819 0.45 +0.9
4,001,709 - rarD b3819 0.45 -1.0
4,001,709 - rarD b3819 0.45 +0.1
4,001,711 - rarD b3819 0.45 -0.2
4,001,771 + rarD b3819 0.52 +0.6
4,001,779 - rarD b3819 0.53 -0.6
4,001,779 - rarD b3819 0.53 +0.5
4,001,780 + rarD b3819 0.53 +0.6
4,001,781 + rarD b3819 0.53 -0.8
4,001,783 - rarD b3819 0.53 +0.5

Or see this region's nucleotide sequence