Strain Fitness in Escherichia coli BW25113 around b3817
Experiment: LB Anaerobic with Norfloxacin 0.00000015625 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB Anaerobic with Norfloxacin 0.00000015625 mM |
---|---|---|---|---|---|
remove | |||||
3,999,548 | - | corA | b3816 | 0.10 | +0.4 |
3,999,582 | + | +1.1 | |||
3,999,582 | + | corA | b3816 | 0.14 | -0.9 |
3,999,584 | + | corA | b3816 | 0.14 | +0.6 |
3,999,588 | + | corA | b3816 | 0.15 | -0.4 |
3,999,664 | + | corA | b3816 | 0.23 | +0.4 |
3,999,664 | + | corA | b3816 | 0.23 | +0.7 |
3,999,664 | + | corA | b3816 | 0.23 | +0.6 |
3,999,665 | + | corA | b3816 | 0.23 | +0.9 |
3,999,665 | + | corA | b3816 | 0.23 | +1.1 |
3,999,718 | - | corA | b3816 | 0.28 | +1.3 |
3,999,718 | - | corA | b3816 | 0.28 | -1.3 |
3,999,723 | - | corA | b3816 | 0.29 | -0.2 |
3,999,743 | - | corA | b3816 | 0.31 | +0.6 |
3,999,751 | + | corA | b3816 | 0.32 | +0.3 |
3,999,758 | - | corA | b3816 | 0.32 | -0.3 |
3,999,758 | - | corA | b3816 | 0.32 | -1.7 |
3,999,765 | + | corA | b3816 | 0.33 | +1.8 |
3,999,768 | - | corA | b3816 | 0.34 | -1.2 |
3,999,768 | - | corA | b3816 | 0.34 | +0.6 |
3,999,797 | - | corA | b3816 | 0.37 | -0.2 |
3,999,797 | - | corA | b3816 | 0.37 | +0.7 |
3,999,804 | + | corA | b3816 | 0.37 | -0.4 |
3,999,826 | + | corA | b3816 | 0.40 | +0.7 |
3,999,877 | + | corA | b3816 | 0.45 | +0.3 |
3,999,877 | - | corA | b3816 | 0.45 | +0.6 |
3,999,898 | + | corA | b3816 | 0.47 | -0.2 |
3,999,898 | + | corA | b3816 | 0.47 | -1.4 |
3,999,898 | + | corA | b3816 | 0.47 | +0.9 |
3,999,899 | + | corA | b3816 | 0.47 | -0.2 |
3,999,958 | + | corA | b3816 | 0.54 | -0.2 |
3,999,970 | + | corA | b3816 | 0.55 | +0.6 |
3,999,970 | + | corA | b3816 | 0.55 | +0.6 |
3,999,978 | - | corA | b3816 | 0.56 | +0.0 |
3,999,978 | - | corA | b3816 | 0.56 | +1.1 |
4,000,008 | + | corA | b3816 | 0.59 | -1.9 |
4,000,019 | + | corA | b3816 | 0.60 | -0.4 |
4,000,040 | + | corA | b3816 | 0.62 | +0.8 |
4,000,040 | + | corA | b3816 | 0.62 | -0.3 |
4,000,077 | - | corA | b3816 | 0.66 | -0.3 |
4,000,077 | - | corA | b3816 | 0.66 | +1.1 |
4,000,103 | + | corA | b3816 | 0.69 | -0.9 |
4,000,147 | + | corA | b3816 | 0.73 | +0.1 |
4,000,147 | + | corA | b3816 | 0.73 | +0.9 |
4,000,154 | + | corA | b3816 | 0.74 | +0.4 |
4,000,202 | - | corA | b3816 | 0.79 | -0.4 |
4,000,214 | + | corA | b3816 | 0.80 | -0.7 |
4,000,214 | + | corA | b3816 | 0.80 | -0.3 |
4,000,232 | - | corA | b3816 | 0.82 | +1.3 |
4,000,238 | + | corA | b3816 | 0.83 | +0.9 |
4,000,273 | - | corA | b3816 | 0.87 | +0.7 |
4,000,275 | - | corA | b3816 | 0.87 | -1.4 |
4,000,291 | - | corA | b3816 | 0.89 | +0.8 |
4,000,301 | + | corA | b3816 | 0.90 | +0.2 |
4,000,340 | + | +0.9 | |||
4,000,340 | + | -0.2 | |||
4,000,340 | + | -1.9 | |||
4,000,369 | + | +0.5 | |||
4,000,410 | + | +0.4 | |||
4,000,414 | + | +0.1 | |||
4,000,415 | + | +0.3 | |||
4,000,415 | - | +0.6 | |||
4,000,423 | - | +0.3 | |||
4,000,430 | + | -0.7 | |||
4,000,430 | + | +0.4 | |||
4,000,430 | + | -1.2 | |||
4,000,437 | + | +0.1 | |||
4,000,437 | + | -1.6 | |||
4,000,440 | + | -0.0 | |||
4,000,445 | - | +0.0 | |||
4,000,445 | - | +0.9 | |||
4,000,455 | - | +0.4 | |||
4,000,459 | - | -0.8 | |||
4,000,474 | - | -0.6 | |||
4,000,485 | + | yigF | b3817 | 0.11 | +2.3 |
4,000,491 | + | yigF | b3817 | 0.13 | +0.2 |
4,000,492 | - | yigF | b3817 | 0.13 | +0.7 |
4,000,496 | + | yigF | b3817 | 0.14 | +1.5 |
4,000,506 | + | yigF | b3817 | 0.17 | +1.1 |
4,000,508 | + | yigF | b3817 | 0.17 | -0.1 |
4,000,508 | + | yigF | b3817 | 0.17 | -0.8 |
4,000,508 | + | yigF | b3817 | 0.17 | +0.7 |
4,000,508 | + | yigF | b3817 | 0.17 | +0.0 |
4,000,509 | + | yigF | b3817 | 0.18 | -0.7 |
4,000,509 | + | yigF | b3817 | 0.18 | +0.9 |
4,000,509 | + | yigF | b3817 | 0.18 | +0.3 |
4,000,509 | + | yigF | b3817 | 0.18 | -0.4 |
4,000,510 | - | yigF | b3817 | 0.18 | +0.3 |
4,000,510 | - | yigF | b3817 | 0.18 | +1.0 |
4,000,512 | - | yigF | b3817 | 0.18 | +0.1 |
4,000,512 | - | yigF | b3817 | 0.18 | +0.6 |
4,000,516 | - | yigF | b3817 | 0.19 | -0.0 |
4,000,516 | - | yigF | b3817 | 0.19 | +1.0 |
4,000,516 | - | yigF | b3817 | 0.19 | +0.7 |
4,000,516 | - | yigF | b3817 | 0.19 | +0.5 |
4,000,517 | - | yigF | b3817 | 0.20 | -1.2 |
4,000,517 | - | yigF | b3817 | 0.20 | +0.1 |
4,000,546 | - | yigF | b3817 | 0.27 | +2.1 |
4,000,561 | + | yigF | b3817 | 0.31 | -0.0 |
4,000,561 | + | yigF | b3817 | 0.31 | -0.4 |
4,000,563 | + | yigF | b3817 | 0.32 | +1.7 |
4,000,570 | + | yigF | b3817 | 0.34 | +0.4 |
4,000,570 | + | yigF | b3817 | 0.34 | +0.9 |
4,000,570 | + | yigF | b3817 | 0.34 | -0.8 |
4,000,606 | + | yigF | b3817 | 0.43 | +1.1 |
4,000,606 | + | yigF | b3817 | 0.43 | +2.1 |
4,000,635 | - | yigF | b3817 | 0.51 | -0.1 |
4,000,814 | - | +2.1 | |||
4,000,867 | - | +1.1 | |||
4,000,867 | - | -0.2 | |||
4,000,927 | - | yigG | b3818 | 0.24 | +2.1 |
4,001,179 | - | +0.8 | |||
4,001,185 | - | +0.1 | |||
4,001,195 | - | +0.4 | |||
4,001,205 | - | -0.3 | |||
4,001,232 | + | +2.1 | |||
4,001,238 | - | +0.4 | |||
4,001,238 | - | -0.5 | |||
4,001,238 | - | -1.5 | |||
4,001,238 | - | -1.3 | |||
4,001,238 | - | +0.2 | |||
4,001,238 | - | -0.4 | |||
4,001,240 | - | -0.6 | |||
4,001,240 | - | -0.3 | |||
4,001,242 | + | +2.1 | |||
4,001,242 | + | +2.1 | |||
4,001,242 | + | +0.6 | |||
4,001,242 | - | -1.9 | |||
4,001,244 | + | +2.1 | |||
4,001,244 | + | +2.1 | |||
4,001,250 | - | +1.0 | |||
4,001,250 | - | +1.6 | |||
4,001,250 | - | -0.2 | |||
4,001,252 | - | +2.1 | |||
4,001,253 | + | +2.1 | |||
4,001,262 | - | +0.7 | |||
4,001,262 | - | +0.2 | |||
4,001,263 | - | -1.2 | |||
4,001,263 | - | +1.1 | |||
4,001,263 | - | +1.1 | |||
4,001,268 | + | +2.1 | |||
4,001,274 | - | -0.0 | |||
4,001,276 | - | +0.1 | |||
4,001,276 | - | +0.6 | |||
4,001,276 | - | +0.0 | |||
4,001,276 | - | +0.6 | |||
4,001,276 | - | +0.5 | |||
4,001,276 | - | -1.2 | |||
4,001,277 | - | -0.4 | |||
4,001,277 | - | -0.2 | |||
4,001,279 | - | +0.5 | |||
4,001,329 | - | +1.0 | |||
4,001,329 | - | -0.5 | |||
4,001,329 | - | +0.0 | |||
4,001,329 | - | -0.6 | |||
4,001,329 | - | +0.9 | |||
4,001,329 | - | -0.8 | |||
4,001,329 | - | +0.2 | |||
4,001,329 | - | +1.6 | |||
4,001,329 | - | -0.5 | |||
4,001,329 | - | -0.4 | |||
4,001,329 | - | +0.2 | |||
4,001,329 | - | +0.3 | |||
4,001,329 | - | -1.1 | |||
4,001,329 | - | +0.9 | |||
4,001,329 | - | -0.4 | |||
4,001,329 | - | -0.4 | |||
4,001,329 | - | -0.3 | |||
4,001,329 | - | +1.3 | |||
4,001,329 | - | +0.7 | |||
4,001,329 | - | -2.3 | |||
4,001,329 | - | +0.6 | |||
4,001,329 | - | +0.1 | |||
4,001,331 | - | -0.7 | |||
4,001,331 | - | +0.7 | |||
4,001,338 | - | +0.3 | |||
4,001,338 | - | +0.3 | |||
4,001,339 | - | -0.0 | |||
4,001,339 | - | +0.7 | |||
4,001,339 | - | +0.5 | |||
4,001,341 | - | -0.1 | |||
4,001,341 | - | -0.3 | |||
4,001,347 | + | +2.1 | |||
4,001,347 | + | +2.1 | |||
4,001,372 | - | -0.5 | |||
4,001,386 | - | -0.2 | |||
4,001,386 | - | +1.0 | |||
4,001,387 | + | +2.1 | |||
4,001,395 | + | +2.1 | |||
4,001,395 | - | -1.4 | |||
4,001,403 | - | rarD | b3819 | 0.10 | -1.0 |
4,001,417 | - | rarD | b3819 | 0.12 | -0.2 |
4,001,448 | - | rarD | b3819 | 0.15 | +0.7 |
4,001,453 | + | rarD | b3819 | 0.16 | +1.1 |
4,001,453 | + | rarD | b3819 | 0.16 | +2.6 |
4,001,461 | - | rarD | b3819 | 0.17 | +0.5 |
4,001,461 | - | rarD | b3819 | 0.17 | +0.9 |
4,001,467 | - | rarD | b3819 | 0.18 | -0.3 |
4,001,467 | - | rarD | b3819 | 0.18 | +0.3 |
4,001,467 | - | rarD | b3819 | 0.18 | -0.3 |
4,001,469 | - | rarD | b3819 | 0.18 | +0.2 |
4,001,474 | - | rarD | b3819 | 0.18 | -0.5 |
4,001,478 | + | rarD | b3819 | 0.19 | +2.1 |
4,001,485 | - | rarD | b3819 | 0.20 | -0.2 |
4,001,486 | - | rarD | b3819 | 0.20 | -0.5 |
4,001,486 | - | rarD | b3819 | 0.20 | -0.8 |
4,001,530 | - | rarD | b3819 | 0.25 | -1.0 |
4,001,530 | - | rarD | b3819 | 0.25 | +0.3 |
4,001,533 | + | rarD | b3819 | 0.25 | +0.9 |
4,001,533 | + | rarD | b3819 | 0.25 | -0.1 |
4,001,586 | + | rarD | b3819 | 0.31 | -0.7 |
4,001,597 | + | rarD | b3819 | 0.32 | -1.1 |
4,001,597 | + | rarD | b3819 | 0.32 | -0.1 |
4,001,597 | + | rarD | b3819 | 0.32 | -0.4 |
4,001,605 | + | rarD | b3819 | 0.33 | -1.4 |
4,001,605 | - | rarD | b3819 | 0.33 | +0.8 |
4,001,613 | - | rarD | b3819 | 0.34 | -0.2 |
4,001,615 | - | rarD | b3819 | 0.34 | +1.1 |
4,001,615 | - | rarD | b3819 | 0.34 | +1.2 |
4,001,650 | + | rarD | b3819 | 0.38 | -0.4 |
4,001,653 | + | rarD | b3819 | 0.38 | +3.1 |
4,001,654 | - | rarD | b3819 | 0.38 | -0.9 |
4,001,662 | - | rarD | b3819 | 0.39 | -0.7 |
4,001,687 | - | rarD | b3819 | 0.42 | -1.1 |
4,001,687 | - | rarD | b3819 | 0.42 | +0.1 |
4,001,695 | + | rarD | b3819 | 0.43 | -1.7 |
4,001,698 | - | rarD | b3819 | 0.43 | +0.1 |
4,001,700 | + | rarD | b3819 | 0.44 | +2.1 |
4,001,700 | + | rarD | b3819 | 0.44 | +0.6 |
4,001,700 | - | rarD | b3819 | 0.44 | -0.0 |
4,001,701 | - | rarD | b3819 | 0.44 | +0.1 |
4,001,703 | - | rarD | b3819 | 0.44 | +0.2 |
4,001,708 | - | rarD | b3819 | 0.45 | +0.9 |
4,001,709 | - | rarD | b3819 | 0.45 | -1.0 |
4,001,709 | - | rarD | b3819 | 0.45 | +0.1 |
4,001,711 | - | rarD | b3819 | 0.45 | -0.2 |
4,001,771 | + | rarD | b3819 | 0.52 | +0.6 |
4,001,779 | - | rarD | b3819 | 0.53 | -0.6 |
4,001,779 | - | rarD | b3819 | 0.53 | +0.5 |
4,001,780 | + | rarD | b3819 | 0.53 | +0.6 |
4,001,781 | + | rarD | b3819 | 0.53 | -0.8 |
4,001,783 | - | rarD | b3819 | 0.53 | +0.5 |
Or see this region's nucleotide sequence