Strain Fitness in Escherichia coli BW25113 around b3026

Experiment: LB Anaerobic with Norfloxacin 0.00000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygiW and qseB are separated by 151 nucleotidesqseB and qseC overlap by 4 nucleotidesqseC and ygiZ are separated by 45 nucleotidesygiZ and mdaB are separated by 318 nucleotides b3024: ygiW - hypothetical protein (NCBI), at 3,167,306 to 3,167,698 ygiW b3025: qseB - DNA-binding response regulator in two-component regulatory system with QseC (NCBI), at 3,167,850 to 3,168,509 qseB b3026: qseC - sensory histidine kinase in two-component regulatory system with QseB (NCBI), at 3,168,506 to 3,169,855 qseC b3027: ygiZ - conserved inner membrane protein (NCBI), at 3,169,901 to 3,170,233 ygiZ b3028: mdaB - NADPH quinone reductase (NCBI), at 3,170,552 to 3,171,133 mdaB Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3167.512 kb on + strand, within ygiWat 3167.652 kb on + strand, within ygiWat 3167.718 kb on - strandat 3167.793 kb on - strandat 3167.793 kb on - strandat 3167.798 kb on + strandat 3167.800 kb on + strandat 3167.800 kb on + strandat 3167.800 kb on + strandat 3167.979 kb on + strand, within qseBat 3167.987 kb on - strand, within qseBat 3167.987 kb on - strand, within qseBat 3168.014 kb on - strand, within qseBat 3168.014 kb on - strand, within qseBat 3168.045 kb on + strand, within qseBat 3168.096 kb on + strand, within qseBat 3168.108 kb on + strand, within qseBat 3168.112 kb on + strand, within qseBat 3168.179 kb on - strand, within qseBat 3168.192 kb on + strand, within qseBat 3168.235 kb on + strand, within qseBat 3168.287 kb on + strand, within qseBat 3168.288 kb on + strand, within qseBat 3168.288 kb on + strand, within qseBat 3168.345 kb on + strand, within qseBat 3168.357 kb on - strand, within qseBat 3168.357 kb on - strand, within qseBat 3168.383 kb on + strand, within qseBat 3168.388 kb on - strand, within qseBat 3168.388 kb on - strand, within qseBat 3168.407 kb on + strand, within qseBat 3168.485 kb on + strandat 3168.499 kb on - strandat 3168.560 kb on - strandat 3168.678 kb on - strand, within qseCat 3168.797 kb on + strand, within qseCat 3168.806 kb on - strand, within qseCat 3168.824 kb on + strand, within qseCat 3168.852 kb on + strand, within qseCat 3168.909 kb on + strand, within qseCat 3168.943 kb on - strand, within qseCat 3169.046 kb on + strand, within qseCat 3169.087 kb on + strand, within qseCat 3169.161 kb on + strand, within qseCat 3169.194 kb on + strand, within qseCat 3169.200 kb on - strand, within qseCat 3169.246 kb on - strand, within qseCat 3169.247 kb on - strand, within qseCat 3169.265 kb on - strand, within qseCat 3169.341 kb on - strand, within qseCat 3169.397 kb on + strand, within qseCat 3169.397 kb on + strand, within qseCat 3169.419 kb on - strand, within qseCat 3169.477 kb on + strand, within qseCat 3169.485 kb on - strand, within qseCat 3169.521 kb on - strand, within qseCat 3169.528 kb on - strand, within qseCat 3169.537 kb on + strand, within qseCat 3169.620 kb on + strand, within qseCat 3169.620 kb on + strand, within qseCat 3169.625 kb on + strand, within qseCat 3169.625 kb on + strand, within qseCat 3169.677 kb on + strand, within qseCat 3169.752 kb on + strandat 3169.752 kb on + strandat 3169.800 kb on + strandat 3169.825 kb on + strandat 3169.825 kb on + strandat 3169.830 kb on + strandat 3169.830 kb on + strandat 3169.840 kb on + strandat 3169.841 kb on + strandat 3169.849 kb on - strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.863 kb on + strandat 3169.871 kb on - strandat 3169.874 kb on + strandat 3169.874 kb on + strandat 3169.888 kb on + strandat 3169.911 kb on + strandat 3169.911 kb on + strandat 3169.912 kb on + strandat 3169.936 kb on + strand, within ygiZat 3169.951 kb on + strand, within ygiZat 3169.985 kb on + strand, within ygiZat 3170.288 kb on - strandat 3170.356 kb on - strandat 3170.390 kb on - strandat 3170.395 kb on - strandat 3170.422 kb on - strandat 3170.422 kb on - strandat 3170.430 kb on - strandat 3170.438 kb on + strandat 3170.438 kb on + strandat 3170.446 kb on - strandat 3170.446 kb on - strandat 3170.521 kb on - strandat 3170.521 kb on - strandat 3170.521 kb on - strandat 3170.521 kb on - strandat 3170.596 kb on + strandat 3170.596 kb on + strandat 3170.601 kb on + strandat 3170.748 kb on - strand, within mdaBat 3170.748 kb on - strand, within mdaBat 3170.750 kb on + strand, within mdaBat 3170.761 kb on + strand, within mdaBat 3170.781 kb on - strand, within mdaBat 3170.828 kb on + strand, within mdaBat 3170.838 kb on - strand, within mdaB

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Norfloxacin 0.00000015625 mM
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3,167,512 + ygiW b3024 0.52 +1.1
3,167,652 + ygiW b3024 0.88 -0.5
3,167,718 - -0.4
3,167,793 - -0.0
3,167,793 - -0.5
3,167,798 + +0.2
3,167,800 + +0.6
3,167,800 + -0.2
3,167,800 + -0.5
3,167,979 + qseB b3025 0.20 -2.0
3,167,987 - qseB b3025 0.21 +0.1
3,167,987 - qseB b3025 0.21 -1.0
3,168,014 - qseB b3025 0.25 -0.5
3,168,014 - qseB b3025 0.25 +0.6
3,168,045 + qseB b3025 0.30 +0.1
3,168,096 + qseB b3025 0.37 +0.2
3,168,108 + qseB b3025 0.39 -0.2
3,168,112 + qseB b3025 0.40 -1.1
3,168,179 - qseB b3025 0.50 +0.5
3,168,192 + qseB b3025 0.52 -0.4
3,168,235 + qseB b3025 0.58 -0.2
3,168,287 + qseB b3025 0.66 -1.0
3,168,288 + qseB b3025 0.66 +0.3
3,168,288 + qseB b3025 0.66 +0.1
3,168,345 + qseB b3025 0.75 -0.2
3,168,357 - qseB b3025 0.77 +2.3
3,168,357 - qseB b3025 0.77 -2.1
3,168,383 + qseB b3025 0.81 -0.8
3,168,388 - qseB b3025 0.82 -0.1
3,168,388 - qseB b3025 0.82 +0.8
3,168,407 + qseB b3025 0.84 -0.5
3,168,485 + +0.5
3,168,499 - +0.2
3,168,560 - +0.9
3,168,678 - qseC b3026 0.13 +1.1
3,168,797 + qseC b3026 0.22 +2.7
3,168,806 - qseC b3026 0.22 +0.9
3,168,824 + qseC b3026 0.24 +0.3
3,168,852 + qseC b3026 0.26 -0.1
3,168,909 + qseC b3026 0.30 +0.9
3,168,943 - qseC b3026 0.32 +0.9
3,169,046 + qseC b3026 0.40 +1.5
3,169,087 + qseC b3026 0.43 +1.9
3,169,161 + qseC b3026 0.49 +1.3
3,169,194 + qseC b3026 0.51 +0.3
3,169,200 - qseC b3026 0.51 +0.3
3,169,246 - qseC b3026 0.55 +1.9
3,169,247 - qseC b3026 0.55 +0.3
3,169,265 - qseC b3026 0.56 +0.9
3,169,341 - qseC b3026 0.62 +1.9
3,169,397 + qseC b3026 0.66 +1.1
3,169,397 + qseC b3026 0.66 +2.9
3,169,419 - qseC b3026 0.68 +0.9
3,169,477 + qseC b3026 0.72 +2.9
3,169,485 - qseC b3026 0.73 +0.9
3,169,521 - qseC b3026 0.75 +1.9
3,169,528 - qseC b3026 0.76 +2.9
3,169,537 + qseC b3026 0.76 +0.9
3,169,620 + qseC b3026 0.83 +2.5
3,169,620 + qseC b3026 0.83 +1.9
3,169,625 + qseC b3026 0.83 +1.3
3,169,625 + qseC b3026 0.83 +0.6
3,169,677 + qseC b3026 0.87 +1.9
3,169,752 + +1.3
3,169,752 + +2.9
3,169,800 + +2.7
3,169,825 + +0.9
3,169,825 + +0.9
3,169,830 + +0.3
3,169,830 + +1.5
3,169,840 + -0.2
3,169,841 + +1.1
3,169,849 - +1.9
3,169,863 + -0.5
3,169,863 + +0.7
3,169,863 + -0.5
3,169,863 + -0.9
3,169,863 + -0.0
3,169,863 + -0.2
3,169,863 + +0.9
3,169,863 + +0.1
3,169,863 + -1.9
3,169,871 - +1.9
3,169,874 + +1.9
3,169,874 + +1.3
3,169,888 + -0.1
3,169,911 + +1.9
3,169,911 + -0.1
3,169,912 + +0.9
3,169,936 + ygiZ b3027 0.11 +1.9
3,169,951 + ygiZ b3027 0.15 +1.9
3,169,985 + ygiZ b3027 0.25 +1.9
3,170,288 - +0.9
3,170,356 - +0.3
3,170,390 - -1.6
3,170,395 - -0.6
3,170,422 - -0.1
3,170,422 - -2.2
3,170,430 - -0.2
3,170,438 + +1.9
3,170,438 + +1.9
3,170,446 - -0.7
3,170,446 - +0.4
3,170,521 - +1.9
3,170,521 - -0.1
3,170,521 - +0.1
3,170,521 - -0.1
3,170,596 + +0.2
3,170,596 + -0.5
3,170,601 + -1.0
3,170,748 - mdaB b3028 0.34 +0.4
3,170,748 - mdaB b3028 0.34 -0.4
3,170,750 + mdaB b3028 0.34 -1.2
3,170,761 + mdaB b3028 0.36 +0.5
3,170,781 - mdaB b3028 0.39 +0.7
3,170,828 + mdaB b3028 0.47 -0.0
3,170,838 - mdaB b3028 0.49 -1.2

Or see this region's nucleotide sequence