Strain Fitness in Escherichia coli BW25113 around b0970

Experiment: LB Anaerobic with Norfloxacin 0.00000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyccW and yccX are separated by 94 nucleotidesyccX and yccK overlap by 4 nucleotidesyccK and yccA are separated by 90 nucleotidesyccA and serT are separated by 206 nucleotidesserT and hyaA are separated by 426 nucleotides b0967: yccW - predicted methyltransferase (RefSeq), at 1,028,002 to 1,029,192 yccW b0968: yccX - predicted acylphosphatase (NCBI), at 1,029,287 to 1,029,565 yccX b0969: yccK - putative sulfite reductase (EC 1.8.-.-) (VIMSS), at 1,029,562 to 1,029,891 yccK b0970: yccA - inner membrane protein (NCBI), at 1,029,982 to 1,030,641 yccA b0971: serT - tRNA-Ser (NCBI), at 1,030,848 to 1,030,935 serT b0972: hyaA - hydrogenase 1, small subunit (NCBI), at 1,031,362 to 1,032,480 hyaA Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -2 -1 0 1 2at 1028.984 kb on - strand, within yccWat 1029.155 kb on - strandat 1029.171 kb on - strandat 1029.269 kb on + strandat 1029.273 kb on - strandat 1029.273 kb on - strandat 1029.279 kb on - strandat 1029.322 kb on - strand, within yccXat 1029.322 kb on - strand, within yccXat 1029.343 kb on + strand, within yccXat 1029.348 kb on + strand, within yccXat 1029.477 kb on - strand, within yccXat 1029.477 kb on - strand, within yccXat 1029.501 kb on + strand, within yccXat 1029.529 kb on - strand, within yccXat 1029.529 kb on - strand, within yccXat 1029.860 kb on + strandat 1029.960 kb on + strandat 1029.980 kb on + strandat 1029.980 kb on + strandat 1030.084 kb on + strand, within yccAat 1030.154 kb on + strand, within yccAat 1030.275 kb on + strand, within yccAat 1030.314 kb on + strand, within yccAat 1030.314 kb on + strand, within yccAat 1030.322 kb on - strand, within yccAat 1030.322 kb on - strand, within yccAat 1030.556 kb on - strand, within yccAat 1030.592 kb on - strandat 1030.592 kb on - strandat 1030.597 kb on + strandat 1030.613 kb on - strandat 1030.700 kb on - strandat 1030.756 kb on + strandat 1030.830 kb on - strandat 1030.955 kb on - strandat 1031.232 kb on + strandat 1031.317 kb on - strandat 1031.352 kb on + strandat 1031.352 kb on + strandat 1031.352 kb on - strandat 1031.352 kb on - strandat 1031.405 kb on + strandat 1031.438 kb on - strandat 1031.458 kb on + strandat 1031.478 kb on + strand, within hyaAat 1031.511 kb on + strand, within hyaAat 1031.552 kb on + strand, within hyaA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Norfloxacin 0.00000015625 mM
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1,028,984 - yccW b0967 0.82 -0.8
1,029,155 - -0.8
1,029,171 - -0.5
1,029,269 + +0.2
1,029,273 - -0.3
1,029,273 - -1.2
1,029,279 - +0.6
1,029,322 - yccX b0968 0.13 +1.0
1,029,322 - yccX b0968 0.13 -0.3
1,029,343 + yccX b0968 0.20 -0.7
1,029,348 + yccX b0968 0.22 -0.4
1,029,477 - yccX b0968 0.68 +1.7
1,029,477 - yccX b0968 0.68 -0.3
1,029,501 + yccX b0968 0.77 -2.6
1,029,529 - yccX b0968 0.87 -0.5
1,029,529 - yccX b0968 0.87 -0.1
1,029,860 + +2.7
1,029,960 + +0.7
1,029,980 + -0.9
1,029,980 + -0.0
1,030,084 + yccA b0970 0.15 +0.1
1,030,154 + yccA b0970 0.26 +1.7
1,030,275 + yccA b0970 0.44 -0.5
1,030,314 + yccA b0970 0.50 -1.5
1,030,314 + yccA b0970 0.50 +0.2
1,030,322 - yccA b0970 0.52 +0.6
1,030,322 - yccA b0970 0.52 +0.5
1,030,556 - yccA b0970 0.87 +0.6
1,030,592 - +0.1
1,030,592 - +1.1
1,030,597 + -1.1
1,030,613 - -0.7
1,030,700 - -0.6
1,030,756 + -1.2
1,030,830 - -0.2
1,030,955 - -2.4
1,031,232 + -0.3
1,031,317 - +0.4
1,031,352 + +0.2
1,031,352 + +0.0
1,031,352 - -1.6
1,031,352 - +0.4
1,031,405 + +0.8
1,031,438 - -0.3
1,031,458 + +0.7
1,031,478 + hyaA b0972 0.10 +1.5
1,031,511 + hyaA b0972 0.13 -0.2
1,031,552 + hyaA b0972 0.17 +0.5

Or see this region's nucleotide sequence