Strain Fitness in Pseudomonas putida KT2440 around PP_5514

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
2,606,952	+		PP_2284	0.62	-0.2
2,606,999	+		PP_2284	0.64	-1.5
2,606,999	+		PP_2284	0.64	+0.1
2,607,000	-		PP_2284	0.64	-1.0
2,607,040	-		PP_2284	0.66	+0.8
2,607,040	-		PP_2284	0.66	-0.9
2,607,045	+		PP_2284	0.66	-1.2
2,607,046	-		PP_2284	0.66	+0.5
2,607,046	-		PP_2284	0.66	+0.3
2,607,184	-		PP_2284	0.72	+0.7
2,607,234	+		PP_2284	0.74	+0.5
2,607,235	-		PP_2284	0.74	-0.2
2,607,261	+		PP_2284	0.75	-0.5
2,607,262	-		PP_2284	0.75	+0.2
2,607,262	-		PP_2284	0.75	-0.4
2,607,262	-		PP_2284	0.75	+0.2
2,607,298	-		PP_2284	0.77	-0.0
2,607,324	-		PP_2284	0.78	-0.5
2,607,339	+		PP_2284	0.79	-0.5
2,607,339	+		PP_2284	0.79	+0.6
2,607,340	-		PP_2284	0.79	+1.6
2,607,340	-		PP_2284	0.79	+1.3
2,607,340	-		PP_2284	0.79	-0.5
2,607,432	+		PP_2284	0.83	-0.0
2,607,432	+		PP_2284	0.83	-0.0
2,607,433	-		PP_2284	0.83	+0.3
2,607,433	-		PP_2284	0.83	+0.5
2,607,449	+		PP_2284	0.83	-1.1
2,607,449	+		PP_2284	0.83	-0.9
2,607,484	+		PP_2284	0.85	-0.7
2,607,484	+		PP_2284	0.85	+0.2
2,607,485	-		PP_2284	0.85	-0.7
2,607,485	-		PP_2284	0.85	+1.2
2,607,485	-		PP_2284	0.85	-0.4
2,607,485	-		PP_2284	0.85	-0.1
2,607,500	-		PP_2284	0.86	-0.5
2,607,540	+		PP_2284	0.87	+0.2
2,607,630	+				+0.1
2,607,630	+				+1.3
2,607,630	+				-2.3
2,607,630	+				+0.6
2,607,630	+				-0.1
2,607,631	-				-0.4
2,607,631	-				+0.3
2,607,631	-				-0.6
2,607,631	-				+0.7
2,607,631	-				+0.1
2,607,631	-				-1.7
2,607,631	-				-0.7
2,607,631	-				+0.9
2,607,631	-				+1.2
2,607,636	+				-0.4
2,607,636	+				+0.8
2,607,636	+				+0.4
2,607,636	+				-0.3
2,607,636	+				-1.3
2,607,636	+				+0.4
2,607,636	+				-0.2
2,607,636	+				+0.5
2,607,636	+				-0.1
2,607,637	-				-0.8
2,607,637	-				+1.1
2,607,637	-				-0.5
2,607,637	-				-1.0
2,607,637	-				+1.2
2,607,637	-				+0.5
2,607,639	-				+0.1
2,607,639	-				-0.4
2,607,639	-				+0.2
2,607,639	-				+0.6
2,607,639	-				-0.5
2,607,642	+				+0.1
2,607,643	-				-1.8
2,607,643	-				-0.6
2,607,655	+				+0.4
2,607,656	-				-0.2
2,607,679	+				+1.2
2,607,679	+				-0.6
2,607,679	+				-1.0
2,607,679	+				+0.9
2,607,680	-				-0.5
2,607,694	+				-0.5
2,607,694	+				-1.4
2,607,694	+				-0.4
2,607,695	-				+0.3
2,607,849	-				-2.5
2,607,849	-				+0.1
2,608,044	+		PP_5514	0.37	+0.7
2,608,044	+		PP_5514	0.37	+1.1
2,608,044	+		PP_5514	0.37	+0.2
2,608,045	-		PP_5514	0.37	+0.9
2,608,045	-		PP_5514	0.37	-0.3
2,608,123	+		PP_5514	0.56	+0.6
2,608,123	+		PP_5514	0.56	+0.4
2,608,295	+				-0.3
2,608,295	+				+0.5
2,608,295	+				-0.3
2,608,295	+				-1.0
2,608,295	+				+0.9
2,608,296	-				+1.1
2,608,395	+		PP_2285	0.19	+0.5
2,608,395	+		PP_2285	0.19	+0.7
2,608,395	+		PP_2285	0.19	-1.8
2,608,395	+		PP_2285	0.19	-0.7
2,608,395	+		PP_2285	0.19	-0.1
2,608,529	+		PP_2285	0.43	+0.6
2,608,530	-		PP_2285	0.43	-0.2
2,608,530	-		PP_2285	0.43	-0.5
2,608,568	-		PP_2285	0.50	-0.9
2,608,624	-		PP_2285	0.60	-0.9
2,608,624	-		PP_2285	0.60	-0.1
2,608,624	-		PP_2285	0.60	+1.8
2,608,682	-		PP_2285	0.70	+0.1
2,608,692	+		PP_2285	0.72	+0.4
2,608,692	+		PP_2285	0.72	-0.2
2,608,692	+		PP_2285	0.72	+0.5
2,608,747	-		PP_2285	0.81	-0.1
2,608,791	+		PP_2285	0.89	+0.5
2,608,791	+		PP_2285	0.89	+1.2
2,608,792	-		PP_2285	0.89	-0.0
2,608,839	-				+0.2
2,608,848	+				-0.4
2,608,848	+				+0.7
2,608,849	-				-0.3
2,608,849	-				-0.1
2,608,878	+				-1.2
2,608,878	+				-0.5
2,608,878	+				-0.3
2,608,878	+				-0.2
2,608,878	+				-0.2
2,608,878	+				-0.6
2,608,879	-				+0.6
2,608,910	-				+0.4
2,609,123	+		PP_2286	0.12	-0.1
2,609,123	+		PP_2286	0.12	-0.6
2,609,124	-		PP_2286	0.12	+0.2
2,609,172	+		PP_2286	0.14	-0.7
2,609,173	-		PP_2286	0.14	+0.6
2,609,173	-		PP_2286	0.14	-1.0
2,609,173	-		PP_2286	0.14	-1.0