Strain Fitness in Pseudomonas putida KT2440 around PP_4069

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
4,593,856	+				+0.4
4,593,907	+				+1.1
4,593,908	-				+0.4
4,593,908	-				+1.3
4,593,908	-				-0.3
4,594,067	+		PP_4068	0.10	+0.2
4,594,067	+		PP_4068	0.10	-0.8
4,594,068	-		PP_4068	0.11	-0.2
4,594,068	-		PP_4068	0.11	-0.3
4,594,068	-		PP_4068	0.11	+0.2
4,594,068	-		PP_4068	0.11	+0.5
4,594,177	-		PP_4068	0.26	-0.8
4,594,177	-		PP_4068	0.26	-1.1
4,594,314	+		PP_4068	0.46	+0.2
4,594,407	+		PP_4068	0.59	+0.7
4,594,421	+		PP_4068	0.61	-0.4
4,594,421	+		PP_4068	0.61	-0.1
4,594,421	+		PP_4068	0.61	+0.5
4,594,422	-		PP_4068	0.61	-0.2
4,594,422	-		PP_4068	0.61	-0.0
4,594,471	+		PP_4068	0.68	+0.2
4,594,472	-		PP_4068	0.68	+0.5
4,594,472	-		PP_4068	0.68	+0.4
4,594,472	-		PP_4068	0.68	-1.1
4,594,472	-		PP_4068	0.68	-0.2
4,594,472	-		PP_4068	0.68	-0.2
4,594,605	+		PP_4068	0.87	-0.2
4,594,605	+		PP_4068	0.87	+0.4
4,594,606	-		PP_4068	0.87	-0.9
4,594,606	-		PP_4068	0.87	-0.5
4,594,606	-		PP_4068	0.87	+0.1
4,594,606	-		PP_4068	0.87	+0.2
4,594,643	+				-0.4
4,594,643	+				-0.9
4,594,644	-				-0.4
4,594,644	-				+0.4
4,594,644	-				+0.6
4,594,649	+				+0.1
4,594,649	+				+1.6
4,594,650	-				+0.1
4,594,650	-				-0.3
4,594,668	-				-0.3
4,594,778	+				+0.6
4,594,792	+				+0.4
4,594,851	+		PP_4069	0.22	+0.7
4,594,851	+		PP_4069	0.22	+0.5
4,594,851	+		PP_4069	0.22	+1.4
4,594,852	-		PP_4069	0.22	-0.1
4,595,093	-				+0.2
4,595,093	-				-0.8
4,595,093	-				-0.4
4,595,094	+				-0.6
4,595,094	+				-1.9
4,595,095	-				+0.3
4,595,095	-				-0.1
4,595,095	-				+0.1
4,595,115	+				+0.3
4,595,115	+				-1.6
4,595,115	+				+0.9
4,595,116	-				+0.3
4,595,192	+				+0.5
4,595,293	+				+0.1
4,595,309	+				-0.1
4,595,310	-				-0.1
4,595,310	-				-0.8
4,595,393	-				+0.2
4,595,513	+				+0.5
4,595,513	+				+1.1
4,595,513	+				+0.4
4,595,514	-				+0.4
4,595,514	-				+0.3
4,595,514	-				-0.4
4,595,514	-				+0.8
4,595,516	-				+1.1
4,595,516	-				+0.2
4,595,516	-				-0.1
4,595,516	-				-0.3
4,595,642	+		PP_4070	0.21	+0.7
4,595,642	+		PP_4070	0.21	-2.1
4,595,642	+		PP_4070	0.21	-0.0
4,595,643	-		PP_4070	0.21	+0.1
4,595,643	-		PP_4070	0.21	+0.1
4,595,643	-		PP_4070	0.21	+0.2
4,595,794	+		PP_4070	0.51	-0.5
4,595,794	+				-0.4
4,595,794	+		PP_4070	0.51	+0.1
4,595,795	-		PP_4070	0.51	-1.8
4,595,795	-		PP_4070	0.51	+0.5
4,595,836	-		PP_4070	0.59	-0.5
4,595,892	+		PP_4070	0.70	-0.3
4,596,070	-				-1.1
4,596,070	-				-0.2
4,596,070	-				+0.2
4,596,070	-				+1.1
4,596,070	-				-0.0