Strain Fitness in Pseudomonas putida KT2440 around PP_4058

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
4,577,228	+		PP_4057	0.48	+0.7
4,577,228	+		PP_4057	0.48	+0.9
4,577,229	-		PP_4057	0.48	+0.4
4,577,271	+		PP_4057	0.52	-0.0
4,577,558	+				+0.1
4,577,558	+		PP_4057	0.78	-0.2
4,577,558	+		PP_4057	0.78	+0.1
4,577,567	-		PP_4057	0.79	+0.0
4,577,721	-				+0.6
4,577,789	+				+0.1
4,577,815	-				+0.4
4,577,827	-				-0.4
4,577,859	-				-0.1
4,577,887	+				+0.4
4,578,024	+				+0.3
4,578,025	-				+1.3
4,578,166	-		PP_4058	0.12	+0.9
4,578,303	+		PP_4058	0.18	-1.4
4,578,315	+		PP_4058	0.19	+0.9
4,578,417	+		PP_4058	0.23	+0.5
4,578,418	-		PP_4058	0.23	+1.0
4,578,418	-		PP_4058	0.23	+0.1
4,578,537	+				+2.6
4,578,537	+		PP_4058	0.29	+1.7
4,578,538	-		PP_4058	0.29	+4.4
4,578,538	-		PP_4058	0.29	+0.3
4,578,538	-		PP_4058	0.29	+0.6
4,578,538	-		PP_4058	0.29	+1.4
4,578,570	+		PP_4058	0.30	+1.3
4,578,570	+		PP_4058	0.30	+0.6
4,578,571	-		PP_4058	0.30	-0.6
4,578,600	+		PP_4058	0.32	+2.8
4,578,600	+		PP_4058	0.32	-0.7
4,578,600	+		PP_4058	0.32	+0.9
4,578,600	+		PP_4058	0.32	-0.2
4,578,601	-		PP_4058	0.32	+1.3
4,578,601	-		PP_4058	0.32	+0.5
4,578,601	-		PP_4058	0.32	-0.4
4,578,639	+		PP_4058	0.33	+0.0
4,578,840	+		PP_4058	0.43	+0.2
4,578,841	-		PP_4058	0.43	+0.7
4,578,951	+		PP_4058	0.48	+1.1
4,578,951	+		PP_4058	0.48	-1.4
4,578,951	+		PP_4058	0.48	+0.1
4,578,951	+		PP_4058	0.48	+1.1
4,578,952	-		PP_4058	0.48	+1.5
4,578,952	-		PP_4058	0.48	-1.0
4,578,999	+		PP_4058	0.50	+1.6
4,579,000	-		PP_4058	0.50	+1.5
4,579,005	+		PP_4058	0.50	+1.1
4,579,006	-		PP_4058	0.50	-0.4
4,579,177	-		PP_4058	0.58	+1.1
4,579,231	+		PP_4058	0.60	+0.8
4,579,251	+		PP_4058	0.61	+1.2
4,579,251	+		PP_4058	0.61	+1.3
4,579,251	+		PP_4058	0.61	+1.0
4,579,251	+		PP_4058	0.61	-0.5
4,579,252	-		PP_4058	0.61	-0.2
4,579,287	+		PP_4058	0.63	-0.0
4,579,371	+		PP_4058	0.67	+1.0
4,579,372	-		PP_4058	0.67	+0.3
4,579,372	-		PP_4058	0.67	+1.1
4,579,440	-		PP_4058	0.70	-0.4
4,579,440	-		PP_4058	0.70	+0.2
4,579,505	+				+0.1
4,579,505	+		PP_4058	0.73	+1.2
4,579,506	-		PP_4058	0.73	-0.6
4,579,506	-		PP_4058	0.73	-1.4
4,579,536	+		PP_4058	0.74	-0.2
4,579,537	-		PP_4058	0.74	+0.6
4,579,537	-		PP_4058	0.74	+0.4
4,579,803	+		PP_4058	0.86	+0.8
4,579,803	+		PP_4058	0.86	+0.6
4,579,804	-		PP_4058	0.86	+0.4
4,580,101	+				+0.4
4,580,102	-				+0.6
4,580,102	-				-0.5
4,580,127	+				+1.2
4,580,192	+				+1.0
4,580,192	+				+0.8
4,580,192	+				+0.2
4,580,192	+				+0.5
4,580,192	+				+1.2
4,580,193	-				-2.0
4,580,193	-				-0.4
4,580,193	-				+0.9
4,580,193	-				-2.5
4,580,196	+				+0.2
4,580,196	+				-0.3
4,580,197	-				-1.1
4,580,197	-				-0.8
4,580,197	-				-0.1
4,580,205	-				+0.2
4,580,205	-				-1.0
4,580,297	+				-0.5
4,580,298	-				+0.6
4,580,333	+				+0.8
4,580,334	-				+0.2
4,580,420	+				-0.3
4,580,421	-				+0.2
4,580,456	+		PP_4059	0.11	-0.4
4,580,456	+		PP_4059	0.11	+0.4
4,580,457	-		PP_4059	0.11	+0.6
4,580,522	+		PP_4059	0.12	+0.2
4,580,522	+		PP_4059	0.12	+0.1
4,580,522	+		PP_4059	0.12	+0.3
4,580,522	+		PP_4059	0.12	+0.6
4,580,523	-		PP_4059	0.13	-0.4
4,580,523	-		PP_4059	0.13	+0.4
4,580,523	-		PP_4059	0.13	-0.2
4,580,572	+		PP_4059	0.14	+0.2
4,580,991	-		PP_4059	0.27	+1.3
4,581,093	-		PP_4059	0.30	-0.7