Strain Fitness in Pseudomonas putida KT2440 around PP_3635

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
4,130,200	+		PP_3633	0.87	-0.2
4,130,200	+		PP_3633	0.87	-0.0
4,130,225	+		PP_3633	0.89	+1.1
4,130,226	-		PP_3633	0.89	+0.6
4,130,226	-		PP_3633	0.89	+0.3
4,130,348	+				-0.2
4,130,349	-				+0.2
4,130,349	-				+0.6
4,130,377	+				+1.1
4,130,378	-				+0.5
4,130,378	-				+0.1
4,130,534	+		PP_3634	0.19	+0.6
4,130,534	+		PP_3634	0.19	+0.4
4,130,567	+		PP_3634	0.24	+1.1
4,130,568	-		PP_3634	0.24	-0.7
4,130,882	-		PP_3634	0.70	+0.2
4,130,966	+		PP_3634	0.82	-1.4
4,130,967	-		PP_3634	0.82	+0.8
4,130,967	-		PP_3634	0.82	+0.7
4,130,967	-		PP_3634	0.82	+1.1
4,130,967	-		PP_3634	0.82	-0.1
4,131,129	+				-0.6
4,131,129	+				-0.1
4,131,129	+				-0.4
4,131,130	-				-0.8
4,131,155	+				-0.9
4,131,155	+				+0.0
4,131,156	-				-0.4
4,131,156	-				+0.4
4,131,156	-				-0.3
4,131,156	-				-0.5
4,131,388	+		PP_3635	0.25	+0.9
4,131,388	+		PP_3635	0.25	+1.3
4,131,576	+		PP_3635	0.50	+0.3
4,131,576	+		PP_3635	0.50	-0.3
4,131,638	+		PP_3635	0.58	+1.1
4,131,639	-		PP_3635	0.58	-0.4
4,131,775	+		PP_3635	0.76	+1.2
4,131,775	+		PP_3635	0.76	-0.5
4,131,775	+		PP_3635	0.76	+0.5
4,131,776	-		PP_3635	0.76	+0.6
4,131,776	-		PP_3635	0.76	+0.2
4,131,783	+		PP_3635	0.77	+0.6
4,131,879	-		PP_3635	0.90	-0.4
4,131,879	-		PP_3635	0.90	+1.0
4,131,879	-		PP_3635	0.90	+0.2
4,131,879	-		PP_3635	0.90	+0.5
4,131,894	-				+0.1
4,131,894	-				+0.4
4,131,894	-				+0.9
4,131,894	-				-0.5
4,131,938	+				-0.1
4,131,938	+				+0.5
4,131,939	-				+0.4
4,132,018	+				+0.3
4,132,018	+				+1.0
4,132,018	+				+0.5
4,132,019	-				-0.1
4,132,019	-				-1.7
4,132,073	+				+0.7
4,132,073	+				-0.7
4,132,074	-				+0.0
4,132,101	+		PP_3636	0.12	-0.1
4,132,101	+		PP_3636	0.12	+0.2
4,132,102	-		PP_3636	0.12	-1.5
4,132,102	-		PP_3636	0.12	-0.3
4,132,169	+		PP_3636	0.18	+0.1
4,132,233	-		PP_3636	0.23	-0.1
4,132,233	-		PP_3636	0.23	+1.1
4,132,298	+		PP_3636	0.28	-0.4
4,132,298	+		PP_3636	0.28	+0.8
4,132,299	-		PP_3636	0.29	-0.5
4,132,413	+		PP_3636	0.38	-0.6
4,132,465	+		PP_3636	0.42	-0.2
4,132,465	+		PP_3636	0.42	+0.3
4,132,466	-		PP_3636	0.42	+1.8
4,132,466	-		PP_3636	0.42	+0.0
4,132,495	+		PP_3636	0.45	-0.9
4,132,495	+		PP_3636	0.45	-0.6
4,132,496	-		PP_3636	0.45	+0.7
4,132,541	+		PP_3636	0.49	-1.1
4,132,541	+		PP_3636	0.49	+0.4
4,132,684	+		PP_3636	0.60	-1.3
4,132,684	+		PP_3636	0.60	-0.5
4,132,703	+		PP_3636	0.62	-2.4
4,132,753	+		PP_3636	0.66	-0.1
4,132,753	+		PP_3636	0.66	-0.1
4,132,753	+		PP_3636	0.66	+0.5
4,132,754	-		PP_3636	0.66	-0.0
4,132,754	-		PP_3636	0.66	+0.7
4,132,754	-		PP_3636	0.66	+0.2
4,132,754	-		PP_3636	0.66	+0.5
4,132,754	-		PP_3636	0.66	+0.5
4,132,755	+		PP_3636	0.66	+0.3
4,132,755	+		PP_3636	0.66	-0.5
4,132,756	-		PP_3636	0.66	-2.5
4,132,756	-		PP_3636	0.66	-0.1