Strain Fitness in Pseudomonas putida KT2440 around PP_2939

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
3,341,456	+				-0.2
3,341,456	+				-0.1
3,341,457	-				+0.3
3,341,457	-				-0.5
3,341,514	+				+0.4
3,341,581	-		PP_2938	0.18	-1.5
3,341,670	-		PP_2938	0.31	+0.4
3,341,711	+		PP_2938	0.37	-0.2
3,341,711	+		PP_2938	0.37	-0.8
3,341,712	-		PP_2938	0.37	+1.6
3,341,712	-		PP_2938	0.37	-0.7
3,341,712	-		PP_2938	0.37	-1.4
3,341,712	-		PP_2938	0.37	+0.3
3,341,811	+		PP_2938	0.52	-0.6
3,341,811	+		PP_2938	0.52	-1.1
3,341,812	-				+1.1
3,341,812	-		PP_2938	0.52	-0.9
3,341,812	-		PP_2938	0.52	+0.4
3,341,886	+		PP_2938	0.63	-0.2
3,341,886	+		PP_2938	0.63	-0.1
3,341,887	-		PP_2938	0.63	+0.0
3,341,887	-		PP_2938	0.63	-0.0
3,341,887	-		PP_2938	0.63	-0.6
3,341,887	-		PP_2938	0.63	-0.8
3,341,887	-		PP_2938	0.63	-0.1
3,341,913	-		PP_2938	0.67	+0.4
3,341,913	-		PP_2938	0.67	-1.5
3,341,986	-				-1.5
3,342,021	+		PP_2938	0.82	-0.4
3,342,021	+		PP_2938	0.82	+0.7
3,342,021	+		PP_2938	0.82	+0.7
3,342,022	-		PP_2938	0.83	-0.1
3,342,022	-		PP_2938	0.83	-0.5
3,342,022	-		PP_2938	0.83	+0.2
3,342,226	+				-0.7
3,342,226	+				+1.5
3,342,226	+				-0.8
3,342,227	-				+0.4
3,342,227	-				-0.4
3,342,439	+				-0.1
3,342,440	-				+0.0
3,342,440	-				+1.1
3,342,440	-				-0.2
3,342,440	-				-0.0
3,342,440	-				-0.8
3,342,490	-		PP_2939	0.16	-0.3
3,342,553	+		PP_2939	0.41	+1.1
3,342,605	-		PP_2939	0.62	-1.3
3,342,619	+		PP_2939	0.67	+1.7
3,342,671	+		PP_2939	0.87	+0.6
3,342,671	+		PP_2939	0.87	+0.1
3,342,671	+				-0.2
3,342,672	-		PP_2939	0.88	+0.3
3,342,706	+				-0.8
3,342,706	+				-0.9
3,342,706	+				+0.0
3,342,706	+				+0.5
3,342,707	-				-0.8
3,342,707	-				+0.4
3,342,707	-				-0.7
3,343,226	-				+0.2
3,343,269	+				+0.6
3,343,269	+				+0.4
3,343,270	-				+0.4
3,343,302	+				-0.5
3,343,303	-				+0.3
3,343,338	-				-0.0
3,343,339	+				+0.8
3,343,340	-				-0.4
3,343,486	+				-0.2
3,343,486	+				+0.3
3,343,504	-				-0.4
3,343,525	+				+0.6
3,343,525	+				-0.4
3,343,555	-				-0.4
3,343,586	+				+0.0
3,343,659	-		PP_5541	0.18	-0.6