Strain Fitness in Pseudomonas putida KT2440 around PP_1584

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
1,775,437	-		PP_1582	0.57	+0.1
1,775,481	-		PP_1582	0.61	-0.3
1,775,494	-		PP_1582	0.62	+0.6
1,775,496	+		PP_1582	0.63	+0.3
1,775,496	+		PP_1582	0.63	-0.5
1,775,496	+		PP_1582	0.63	+0.0
1,775,530	+		PP_1582	0.66	+0.1
1,775,531	-		PP_1582	0.66	+0.7
1,775,541	+		PP_1582	0.67	+0.0
1,775,542	-		PP_1582	0.67	+0.3
1,775,542	-		PP_1582	0.67	-0.3
1,775,589	+		PP_1582	0.71	-0.5
1,775,677	-		PP_1582	0.79	+0.0
1,775,677	-		PP_1582	0.79	-0.5
1,775,677	-		PP_1582	0.79	-0.0
1,775,686	+		PP_1582	0.80	-1.4
1,775,687	-		PP_1582	0.80	+0.9
1,775,687	-		PP_1582	0.80	+0.2
1,775,694	+		PP_1582	0.81	-0.0
1,775,694	+				+2.1
1,775,695	-		PP_1582	0.81	+0.1
1,775,695	-		PP_1582	0.81	-0.2
1,775,715	+		PP_1582	0.83	-0.2
1,775,715	+		PP_1582	0.83	+0.2
1,775,715	+		PP_1582	0.83	-0.8
1,775,716	-		PP_1582	0.83	+0.6
1,775,809	+				+0.7
1,775,809	+				-0.0
1,775,809	+				-0.6
1,775,809	+				+0.6
1,775,810	-				+1.5
1,775,810	-				+0.3
1,775,810	-				-0.5
1,775,810	-				+0.5
1,775,855	-				+0.5
1,775,911	-				-0.2
1,776,126	+		PP_1583	0.42	+0.1
1,776,127	-		PP_1583	0.42	-1.1
1,776,191	-		PP_1583	0.56	-0.7
1,776,231	+		PP_1583	0.64	-0.2
1,776,231	+		PP_1583	0.64	-0.8
1,776,232	-		PP_1583	0.64	-0.3
1,776,459	-		PP_1584	0.12	+0.2
1,776,477	+		PP_1584	0.16	+0.8
1,776,477	+		PP_1584	0.16	+0.6
1,776,477	+		PP_1584	0.16	+0.3
1,776,478	-		PP_1584	0.16	+0.5
1,776,478	-		PP_1584	0.16	+0.6
1,776,830	+		PP_1584	0.86	+0.5
1,776,831	-		PP_1584	0.86	+0.1
1,776,831	-		PP_1584	0.86	+1.4
1,776,831	-		PP_1584	0.86	+0.2
1,776,831	-		PP_1584	0.86	+1.7
1,776,846	+		PP_1584	0.89	+0.4
1,776,872	+				+1.3
1,776,873	-				-0.0
1,776,873	-				-0.2
1,776,873	-				+0.5
1,776,924	-				-0.3
1,776,924	-				-1.4
1,776,924	-				+0.5
1,776,947	+				+0.5
1,776,963	+				-0.7
1,776,963	+				-0.9
1,776,963	+				+0.3
1,776,963	+				-0.4
1,776,964	-				-1.8
1,776,964	-				+0.9
1,776,964	-				-0.1
1,776,964	-				+0.1
1,776,964	-				-0.2
1,776,964	-				+0.4
1,776,974	+				+0.2
1,776,974	+				-0.8
1,776,974	+				+0.9
1,776,975	-				+0.9
1,776,975	-				-0.5
1,776,975	-				-0.4
1,776,975	-				-0.4
1,776,975	-				-0.9
1,777,106	+		PP_5476	0.47	-0.2
1,777,106	+		PP_5476	0.47	+0.4
1,777,107	-		PP_5476	0.47	+1.3
1,777,107	-		PP_5476	0.47	+0.1
1,777,107	-		PP_5476	0.47	+0.9
1,777,107	-		PP_5476	0.47	-0.3
1,777,107	-		PP_5476	0.47	-0.9
1,777,107	-		PP_5476	0.47	+0.4
1,777,155	-		PP_5476	0.63	+0.4
1,777,155	-		PP_5476	0.63	-0.2
1,777,155	-		PP_5476	0.63	+1.2
1,777,155	-		PP_5476	0.63	-0.6
1,777,301	+				-0.5
1,777,302	+				+0.5
1,777,302	+				-0.3
1,777,303	-				-0.0
1,777,348	-				+0.4
1,777,417	+				-0.3
1,777,426	+				-0.1
1,777,427	-				-0.3
1,777,438	+				-0.1
1,777,438	+				-0.5
1,777,439	-				+0.5
1,777,496	-				-1.2
1,777,541	+				+0.1
1,777,542	-				-0.5
1,777,542	-				-0.8
1,777,751	-		PP_1585	0.64	-0.3
1,777,751	-		PP_1585	0.64	-0.1
1,777,843	-				-0.5
1,777,843	-				-0.5
1,777,843	-				+0.4
1,777,893	-				+0.2
1,777,893	-				-0.1