Strain Fitness in Pseudomonas putida KT2440 around PP_1565

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
1,758,005	-		PP_1563	0.63	+1.3
1,758,005	-		PP_1563	0.63	+0.6
1,758,103	+		PP_1563	0.69	+1.2
1,758,104	-		PP_1563	0.69	-0.9
1,758,104	-		PP_1563	0.69	-0.1
1,758,106	+		PP_1563	0.69	-0.4
1,758,106	+		PP_1563	0.69	+0.4
1,758,106	+		PP_1563	0.69	+0.2
1,758,106	+		PP_1563	0.69	-0.2
1,758,106	+				+1.6
1,758,106	+		PP_1563	0.69	-1.0
1,758,107	-		PP_1563	0.69	+0.6
1,758,107	-		PP_1563	0.69	-0.3
1,758,107	-		PP_1563	0.69	-1.2
1,758,176	+		PP_1563	0.73	+1.6
1,758,271	+		PP_1563	0.79	-0.1
1,758,271	+		PP_1563	0.79	+0.1
1,758,386	+		PP_1563	0.85	+0.2
1,758,386	+		PP_1563	0.85	-0.6
1,758,386	+		PP_1563	0.85	-0.3
1,758,387	-		PP_1563	0.86	+0.8
1,758,387	-		PP_1563	0.86	+0.5
1,758,387	-		PP_1563	0.86	-0.0
1,758,435	-		PP_1563	0.88	+1.6
1,758,491	-				+0.1
1,758,711	+		PP_1564	0.42	+0.2
1,758,711	+		PP_1564	0.42	+0.5
1,758,711	+		PP_1564	0.42	-0.3
1,758,711	+		PP_1564	0.42	+0.2
1,758,711	+		PP_1564	0.42	+0.1
1,758,711	+		PP_1564	0.42	+1.0
1,758,711	+		PP_1564	0.42	-3.1
1,758,712	-		PP_1564	0.42	+0.7
1,758,712	-		PP_1564	0.42	+1.0
1,758,712	-		PP_1564	0.42	+0.5
1,758,712	-		PP_1564	0.42	-0.1
1,758,928	+				-0.2
1,758,928	+				-0.5
1,758,928	+				-0.5
1,758,928	+				+0.8
1,758,929	-				-0.2
1,758,929	-				-0.1
1,758,929	-				+0.9
1,758,929	-				-0.1
1,758,929	-				+0.4
1,758,931	+				+0.3
1,758,931	+				-0.0
1,758,932	-				-0.1
1,758,932	-				-0.7
1,759,051	+		PP_1565	0.16	+0.2
1,759,051	+		PP_1565	0.16	+1.0
1,759,610	-		PP_1565	0.60	+2.1
1,759,861	+		PP_1565	0.79	-0.2
1,759,862	-		PP_1565	0.79	+1.0
1,759,862	-		PP_1565	0.79	+1.4
1,759,899	+		PP_1565	0.82	+0.5
1,759,900	-		PP_1565	0.82	-0.5
1,759,921	+		PP_1565	0.84	+0.1
1,759,921	+		PP_1565	0.84	-0.0
1,759,921	+		PP_1565	0.84	+0.6
1,759,921	+		PP_1565	0.84	+0.0
1,759,921	+		PP_1565	0.84	+0.9
1,759,921	+		PP_1565	0.84	+0.8
1,759,921	+		PP_1565	0.84	+0.8
1,759,922	-		PP_1565	0.84	+1.1
1,759,922	-		PP_1565	0.84	-0.4
1,759,922	-		PP_1565	0.84	-0.3
1,759,944	+		PP_1565	0.85	+0.1
1,759,945	-		PP_1565	0.85	+1.4
1,759,945	-		PP_1565	0.85	+0.3
1,759,945	-		PP_1565	0.85	-0.0
1,759,945	-		PP_1565	0.85	-0.2
1,759,948	+		PP_1565	0.86	+0.3
1,759,949	-		PP_1565	0.86	+0.3
1,760,121	+				-0.0
1,760,121	+				+0.2
1,760,121	+				+0.3
1,760,121	+				+0.7
1,760,121	+				+0.2
1,760,122	-				+0.1
1,760,122	-				+0.2
1,760,122	-				+1.0
1,760,163	+				-0.7
1,760,164	-				-0.1
1,760,164	-				-0.4
1,760,250	+		PP_1566	0.17	+0.2
1,760,251	-		PP_1566	0.17	-0.5
1,760,500	-		PP_1566	0.53	-0.0
1,760,502	+		PP_1566	0.53	+0.4
1,760,502	+		PP_1566	0.53	+0.8
1,760,502	+		PP_1566	0.53	+0.2
1,760,502	+		PP_1566	0.53	+0.4
1,760,503	-		PP_1566	0.53	-0.1
1,760,503	-		PP_1566	0.53	-0.3
1,760,847	-				-0.5