Strain Fitness in Pseudomonas putida KT2440 around PP_1237

Experiment: D-Glucose (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) 5 mM
1,413,787	+		PP_1235	0.77	+0.0
1,413,788	-		PP_1235	0.77	-0.1
1,413,793	+		PP_1235	0.78	-0.2
1,413,793	+		PP_1235	0.78	-0.4
1,413,793	+		PP_1235	0.78	+0.2
1,413,793	+		PP_1235	0.78	-0.4
1,413,889	-				+0.2
1,413,889	-				+0.3
1,413,909	+				+0.3
1,413,909	+				-0.8
1,413,909	+				+0.0
1,413,910	-				+0.1
1,413,910	-				+0.1
1,413,910	-				+0.3
1,413,910	-				+0.1
1,413,910	-				+0.0
1,413,910	-				+0.0
1,413,910	-				-0.8
1,413,914	-				-0.5
1,413,914	-				+0.7
1,413,914	-				+0.0
1,414,071	+		PP_1236	0.29	-0.4
1,414,072	-		PP_1236	0.29	-1.0
1,414,072	-		PP_1236	0.29	-0.1
1,414,176	+		PP_1236	0.48	+1.3
1,414,176	+		PP_1236	0.48	-0.1
1,414,176	+		PP_1236	0.48	+0.1
1,414,176	+		PP_1236	0.48	-0.1
1,414,176	+		PP_1236	0.48	-0.1
1,414,177	-		PP_1236	0.48	+0.3
1,414,690	+				-0.9
1,414,725	+				-1.2
1,414,725	+				+2.5
1,414,725	+				+0.1
1,414,742	+				-1.5
1,414,742	+				+0.1
1,415,082	+		PP_1237	0.40	-0.3
1,415,150	+		PP_1237	0.48	+0.9
1,415,582	+				-1.7
1,415,606	-				+1.7
1,415,613	+				+0.8
1,415,623	+				+0.7
1,415,624	-				+0.1
1,415,669	+				+1.7
1,415,669	+				-0.3
1,415,739	+				+0.1
1,415,844	-		PP_1238	0.19	+0.1
1,416,142	+		PP_1238	0.46	+2.2
1,416,142	+		PP_1238	0.46	+1.0
1,416,189	+		PP_1238	0.50	-0.7
1,416,189	+		PP_1238	0.50	-1.0
1,416,189	+		PP_1238	0.50	-2.1
1,416,189	+		PP_1238	0.50	-0.4
1,416,189	+		PP_1238	0.50	+0.4
1,416,189	+		PP_1238	0.50	+1.0
1,416,189	+		PP_1238	0.50	-1.2
1,416,189	+		PP_1238	0.50	-0.3
1,416,513	+		PP_1238	0.79	-1.0
1,416,514	-		PP_1238	0.79	+0.7
1,416,514	-		PP_1238	0.79	-1.3
1,416,516	+		PP_1238	0.79	+0.6
1,416,516	+		PP_1238	0.79	+0.1
1,416,516	+		PP_1238	0.79	+0.4
1,416,516	+		PP_1238	0.79	+0.6
1,416,516	+		PP_1238	0.79	-1.2
1,416,516	+		PP_1238	0.79	+0.4
1,416,516	+		PP_1238	0.79	+0.2