Strain Fitness in Pseudomonas simiae WCS417 around PS417_04755

Experiment: soil sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04745 and PS417_04750 overlap by 11 nucleotidesPS417_04750 and PS417_04755 are separated by 10 nucleotidesPS417_04755 and PS417_04760 are separated by 7 nucleotidesPS417_04760 and PS417_04765 overlap by 4 nucleotides PS417_04745: PS417_04745 - fusaric acid resistance protein, at 1,052,730 to 1,054,916 _04745 PS417_04750: PS417_04750 - hypothetical protein, at 1,054,906 to 1,055,106 _04750 PS417_04755: PS417_04755 - membrane protein, at 1,055,117 to 1,055,977 _04755 PS417_04760: PS417_04760 - hypothetical protein, at 1,055,985 to 1,056,386 _04760 PS417_04765: PS417_04765 - membrane protein, at 1,056,383 to 1,057,567 _04765 Position (kb) 1055 1056Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1054.290 kb on + strand, within PS417_04745at 1054.290 kb on + strandat 1054.291 kb on - strand, within PS417_04745at 1054.299 kb on - strand, within PS417_04745at 1054.309 kb on - strand, within PS417_04745at 1054.309 kb on - strand, within PS417_04745at 1054.937 kb on - strand, within PS417_04750at 1054.937 kb on - strand, within PS417_04750at 1054.937 kb on - strand, within PS417_04750at 1054.937 kb on - strand, within PS417_04750at 1054.937 kb on - strand, within PS417_04750at 1054.938 kb on + strand, within PS417_04750at 1054.938 kb on + strand, within PS417_04750at 1054.938 kb on + strand, within PS417_04750at 1054.939 kb on - strand, within PS417_04750at 1054.939 kb on - strand, within PS417_04750at 1055.173 kb on + strandat 1055.198 kb on + strandat 1055.198 kb on + strandat 1055.198 kb on + strandat 1055.199 kb on - strandat 1055.517 kb on - strand, within PS417_04755at 1055.594 kb on + strand, within PS417_04755at 1055.594 kb on + strand, within PS417_04755at 1055.595 kb on - strand, within PS417_04755at 1055.595 kb on - strand, within PS417_04755at 1055.595 kb on - strand, within PS417_04755at 1055.628 kb on - strand, within PS417_04755at 1055.801 kb on + strand, within PS417_04755at 1055.802 kb on - strand, within PS417_04755at 1055.802 kb on - strand, within PS417_04755at 1055.802 kb on - strand, within PS417_04755at 1055.996 kb on + strandat 1056.055 kb on - strand, within PS417_04760at 1056.055 kb on - strand, within PS417_04760at 1056.109 kb on + strand, within PS417_04760at 1056.110 kb on - strand, within PS417_04760at 1056.110 kb on - strand, within PS417_04760at 1056.377 kb on - strandat 1056.423 kb on - strandat 1056.716 kb on + strand, within PS417_04765at 1056.716 kb on + strand, within PS417_04765at 1056.717 kb on - strand, within PS417_04765at 1056.909 kb on - strand, within PS417_04765at 1056.927 kb on + strand, within PS417_04765at 1056.928 kb on - strand, within PS417_04765

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB
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1,054,290 + PS417_04745 0.71 +0.0
1,054,290 + +1.5
1,054,291 - PS417_04745 0.71 -0.2
1,054,299 - PS417_04745 0.72 +0.8
1,054,309 - PS417_04745 0.72 +0.5
1,054,309 - PS417_04745 0.72 -0.4
1,054,937 - PS417_04750 0.15 -0.5
1,054,937 - PS417_04750 0.15 +6.1
1,054,937 - PS417_04750 0.15 +1.5
1,054,937 - PS417_04750 0.15 +0.4
1,054,937 - PS417_04750 0.15 -0.0
1,054,938 + PS417_04750 0.16 -0.1
1,054,938 + PS417_04750 0.16 -0.6
1,054,938 + PS417_04750 0.16 +0.5
1,054,939 - PS417_04750 0.16 +0.5
1,054,939 - PS417_04750 0.16 +1.3
1,055,173 + -1.1
1,055,198 + +0.5
1,055,198 + -2.3
1,055,198 + +3.0
1,055,199 - -2.6
1,055,517 - PS417_04755 0.46 +1.8
1,055,594 + PS417_04755 0.55 -1.9
1,055,594 + PS417_04755 0.55 -0.0
1,055,595 - PS417_04755 0.56 +0.0
1,055,595 - PS417_04755 0.56 -0.4
1,055,595 - PS417_04755 0.56 -2.1
1,055,628 - PS417_04755 0.59 -0.2
1,055,801 + PS417_04755 0.79 +0.4
1,055,802 - PS417_04755 0.80 -2.0
1,055,802 - PS417_04755 0.80 -2.9
1,055,802 - PS417_04755 0.80 -0.1
1,055,996 + -0.6
1,056,055 - PS417_04760 0.17 -1.1
1,056,055 - PS417_04760 0.17 +1.2
1,056,109 + PS417_04760 0.31 +0.3
1,056,110 - PS417_04760 0.31 +1.9
1,056,110 - PS417_04760 0.31 -0.0
1,056,377 - -1.8
1,056,423 - -0.0
1,056,716 + PS417_04765 0.28 -1.0
1,056,716 + PS417_04765 0.28 +1.4
1,056,717 - PS417_04765 0.28 +0.1
1,056,909 - PS417_04765 0.44 +1.2
1,056,927 + PS417_04765 0.46 -0.8
1,056,928 - PS417_04765 0.46 -0.1

Or see this region's nucleotide sequence