Experiment: soil sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04295 and PS417_04300 are separated by 150 nucleotides PS417_04300 and PS417_04305 overlap by 8 nucleotides
PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052
_04295
PS417_04300: PS417_04300 - FagA protein, at 965,203 to 965,598
_04300
PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967
_04305
Position (kb) 965
966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 964.213 kb on + strand, within PS417_04295 at 964.214 kb on - strand, within PS417_04295 at 964.243 kb on + strand, within PS417_04295 at 964.260 kb on + strand, within PS417_04295 at 964.312 kb on + strand, within PS417_04295 at 964.318 kb on + strand, within PS417_04295 at 964.319 kb on - strand, within PS417_04295 at 964.319 kb on - strand, within PS417_04295 at 964.608 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.861 kb on + strand, within PS417_04295 at 964.862 kb on - strand, within PS417_04295 at 965.074 kb on + strand at 965.308 kb on + strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.596 kb on + strand at 965.596 kb on + strand at 965.596 kb on + strand at 965.597 kb on - strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.891 kb on - strand, within PS417_04305 at 966.225 kb on + strand, within PS417_04305
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB remove 964,213 + PS417_04295 0.38 -0.5 964,214 - PS417_04295 0.38 -1.2 964,243 + PS417_04295 0.40 -2.0 964,260 + PS417_04295 0.41 -1.2 964,312 + PS417_04295 0.45 -2.6 964,318 + PS417_04295 0.45 -3.5 964,319 - PS417_04295 0.46 -1.8 964,319 - PS417_04295 0.46 +0.3 964,608 + PS417_04295 0.67 -0.1 964,678 + PS417_04295 0.72 -0.3 964,678 + PS417_04295 0.72 -1.2 964,679 - PS417_04295 0.72 -1.3 964,679 - PS417_04295 0.72 -0.2 964,679 - PS417_04295 0.72 +1.7 964,679 - PS417_04295 0.72 +0.1 964,693 + PS417_04295 0.73 -1.3 964,693 + PS417_04295 0.73 -2.9 964,694 - PS417_04295 0.73 +0.8 964,694 - PS417_04295 0.73 -0.8 964,694 - PS417_04295 0.73 -0.5 964,861 + PS417_04295 0.86 -1.7 964,862 - PS417_04295 0.86 +0.9 965,074 + -0.2 965,308 + PS417_04300 0.27 +1.5 965,309 - PS417_04300 0.27 -2.0 965,309 - PS417_04300 0.27 +0.2 965,309 - PS417_04300 0.27 -1.7 965,596 + +1.2 965,596 + +0.9 965,596 + +1.6 965,597 - -0.8 965,654 + +0.8 965,654 + -0.6 965,654 + -1.0 965,654 + -2.0 965,655 - +3.1 965,655 - +0.7 965,655 - +0.2 965,891 - PS417_04305 0.22 +0.4 966,225 + PS417_04305 0.46 -1.6
Or see this region's nucleotide sequence