Experiment: soil sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03130 and PS417_03135 are separated by 301 nucleotides PS417_03135 and PS417_03140 are separated by 2 nucleotides
PS417_03130: PS417_03130 - hypothetical protein, at 717,613 to 719,256
_03130
PS417_03135: PS417_03135 - acyl dehydratase, at 719,558 to 720,406
_03135
PS417_03140: PS417_03140 - 3-ketoacyl-ACP reductase, at 720,409 to 721,752
_03140
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 718.966 kb on - strand, within PS417_03130 at 718.966 kb on - strand, within PS417_03130 at 718.966 kb on - strand, within PS417_03130 at 719.038 kb on - strand, within PS417_03130 at 719.161 kb on - strand at 719.204 kb on - strand at 719.223 kb on + strand at 719.242 kb on + strand at 719.243 kb on - strand at 719.277 kb on + strand at 719.345 kb on - strand at 719.378 kb on - strand at 719.385 kb on - strand at 719.396 kb on - strand at 719.534 kb on - strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.537 kb on + strand at 719.539 kb on + strand at 719.587 kb on + strand at 719.657 kb on + strand, within PS417_03135 at 719.657 kb on + strand, within PS417_03135 at 719.658 kb on - strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 720.213 kb on + strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.383 kb on - strand at 720.383 kb on - strand at 720.383 kb on - strand at 720.410 kb on + strand at 720.410 kb on + strand at 720.410 kb on + strand at 720.411 kb on - strand at 720.411 kb on - strand at 720.574 kb on - strand, within PS417_03140 at 721.194 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB remove 718,966 - PS417_03130 0.82 +0.2 718,966 - PS417_03130 0.82 +0.4 718,966 - PS417_03130 0.82 +0.1 719,038 - PS417_03130 0.87 +0.5 719,161 - -0.1 719,204 - -0.1 719,223 + +0.7 719,242 + +0.3 719,243 - -0.3 719,277 + +1.0 719,345 - -2.9 719,378 - -0.9 719,385 - -2.2 719,396 - -0.2 719,534 - +0.2 719,535 + +0.1 719,535 + +0.4 719,535 + -0.5 719,537 + -0.5 719,539 + +2.2 719,587 + -0.2 719,657 + PS417_03135 0.12 -0.5 719,657 + PS417_03135 0.12 -1.3 719,658 - PS417_03135 0.12 -1.7 719,987 + PS417_03135 0.51 -0.9 719,987 + PS417_03135 0.51 -1.9 719,987 + PS417_03135 0.51 +0.5 720,213 + PS417_03135 0.77 -0.7 720,214 - PS417_03135 0.77 -1.3 720,214 - PS417_03135 0.77 -0.5 720,383 - -0.6 720,383 - -0.5 720,383 - -1.2 720,410 + +0.0 720,410 + +0.8 720,410 + -0.5 720,411 - -1.9 720,411 - -1.2 720,574 - PS417_03140 0.12 +1.0 721,194 + PS417_03140 0.58 -1.0 721,196 + PS417_03140 0.59 -2.5 721,196 + PS417_03140 0.59 -0.2 721,196 + PS417_03140 0.59 +1.6 721,197 - PS417_03140 0.59 +4.3 721,197 - PS417_03140 0.59 +0.8 721,197 - PS417_03140 0.59 +0.5
Or see this region's nucleotide sequence