Experiment: soil sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01350 and PS417_01355 are separated by 411 nucleotides PS417_01355 and PS417_01360 are separated by 202 nucleotides PS417_01360 and PS417_01365 are separated by 20 nucleotides
PS417_01350: PS417_01350 - TonB-dependent receptor, at 293,594 to 295,681
_01350
PS417_01355: PS417_01355 - membrane protein, at 296,093 to 297,409
_01355
PS417_01360: PS417_01360 - 4-oxalocrotonate tautomerase, at 297,612 to 297,815
_01360
PS417_01365: PS417_01365 - 3-oxoacyl-ACP reductase, at 297,836 to 298,537
_01365
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 295.140 kb on + strand, within PS417_01350 at 295.314 kb on + strand, within PS417_01350 at 295.314 kb on + strand, within PS417_01350 at 295.315 kb on - strand, within PS417_01350 at 295.315 kb on - strand, within PS417_01350 at 295.345 kb on - strand, within PS417_01350 at 295.507 kb on - strand at 295.603 kb on + strand at 295.603 kb on + strand at 295.604 kb on - strand at 295.785 kb on + strand at 295.788 kb on + strand at 295.789 kb on - strand at 295.843 kb on + strand at 295.844 kb on - strand at 295.844 kb on - strand at 295.855 kb on + strand at 295.900 kb on + strand at 295.901 kb on - strand at 295.984 kb on + strand at 296.084 kb on + strand at 296.084 kb on + strand at 296.085 kb on - strand at 296.086 kb on + strand at 296.087 kb on - strand at 296.087 kb on - strand at 296.087 kb on - strand at 296.222 kb on + strand at 296.223 kb on - strand at 296.223 kb on - strand at 296.223 kb on - strand at 296.237 kb on + strand, within PS417_01355 at 296.238 kb on - strand, within PS417_01355 at 296.349 kb on - strand, within PS417_01355 at 296.525 kb on + strand, within PS417_01355 at 296.525 kb on + strand, within PS417_01355 at 296.561 kb on + strand, within PS417_01355 at 296.562 kb on - strand at 296.562 kb on - strand, within PS417_01355 at 296.591 kb on + strand, within PS417_01355 at 296.592 kb on - strand, within PS417_01355 at 296.592 kb on - strand, within PS417_01355 at 296.592 kb on - strand, within PS417_01355 at 296.714 kb on + strand, within PS417_01355 at 296.715 kb on - strand, within PS417_01355 at 296.726 kb on - strand, within PS417_01355 at 296.726 kb on - strand, within PS417_01355 at 296.762 kb on + strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.799 kb on - strand, within PS417_01355 at 296.814 kb on - strand, within PS417_01355 at 297.086 kb on + strand, within PS417_01355 at 297.176 kb on + strand, within PS417_01355 at 297.177 kb on - strand, within PS417_01355 at 297.189 kb on - strand, within PS417_01355 at 297.218 kb on - strand, within PS417_01355 at 297.266 kb on + strand, within PS417_01355 at 297.267 kb on - strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.350 kb on + strand at 297.351 kb on - strand at 297.407 kb on + strand at 297.408 kb on - strand at 297.408 kb on - strand at 297.469 kb on + strand at 297.518 kb on + strand at 297.518 kb on + strand at 297.519 kb on - strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.651 kb on - strand, within PS417_01360 at 297.771 kb on + strand, within PS417_01360 at 298.100 kb on + strand at 298.154 kb on + strand, within PS417_01365 at 298.154 kb on + strand, within PS417_01365
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB remove 295,140 + PS417_01350 0.74 -1.2 295,314 + PS417_01350 0.82 -0.2 295,314 + PS417_01350 0.82 -2.1 295,315 - PS417_01350 0.82 -2.1 295,315 - PS417_01350 0.82 +2.4 295,345 - PS417_01350 0.84 +0.0 295,507 - +0.2 295,603 + -0.3 295,603 + -0.9 295,604 - +0.7 295,785 + +0.9 295,788 + +1.2 295,789 - +0.3 295,843 + -2.1 295,844 - -2.5 295,844 - -0.7 295,855 + +1.2 295,900 + -1.1 295,901 - +1.1 295,984 + +1.2 296,084 + -3.2 296,084 + +0.9 296,085 - -0.1 296,086 + -0.4 296,087 - +0.0 296,087 - +0.7 296,087 - -0.2 296,222 + -1.3 296,223 - +1.8 296,223 - +0.4 296,223 - -0.1 296,237 + PS417_01355 0.11 +2.1 296,238 - PS417_01355 0.11 +1.4 296,349 - PS417_01355 0.19 +0.9 296,525 + PS417_01355 0.33 -0.8 296,525 + PS417_01355 0.33 -0.6 296,561 + PS417_01355 0.36 -1.5 296,562 - -0.4 296,562 - PS417_01355 0.36 +0.1 296,591 + PS417_01355 0.38 -1.3 296,592 - PS417_01355 0.38 -0.3 296,592 - PS417_01355 0.38 +1.2 296,592 - PS417_01355 0.38 -0.9 296,714 + PS417_01355 0.47 -2.3 296,715 - PS417_01355 0.47 -0.1 296,726 - PS417_01355 0.48 -1.1 296,726 - PS417_01355 0.48 -1.0 296,762 + PS417_01355 0.51 +1.5 296,799 - PS417_01355 0.54 -1.5 296,799 - PS417_01355 0.54 -1.4 296,799 - PS417_01355 0.54 -0.6 296,814 - PS417_01355 0.55 -1.2 297,086 + PS417_01355 0.75 -1.9 297,176 + PS417_01355 0.82 -1.4 297,177 - PS417_01355 0.82 +1.6 297,189 - PS417_01355 0.83 -1.7 297,218 - PS417_01355 0.85 -0.6 297,266 + PS417_01355 0.89 -1.3 297,267 - PS417_01355 0.89 +0.0 297,273 + PS417_01355 0.90 +0.3 297,273 + PS417_01355 0.90 +0.9 297,274 - PS417_01355 0.90 -0.7 297,274 - PS417_01355 0.90 -0.4 297,350 + -2.7 297,351 - +0.0 297,407 + +1.3 297,408 - -1.5 297,408 - -0.4 297,469 + +0.6 297,518 + -0.3 297,518 + -1.1 297,519 - +0.3 297,555 + +0.9 297,555 + -1.8 297,555 + +0.2 297,651 - PS417_01360 0.19 -1.0 297,771 + PS417_01360 0.78 -0.5 298,100 + +1.6 298,154 + PS417_01365 0.45 -0.2 298,154 + PS417_01365 0.45 +1.7
Or see this region's nucleotide sequence