Strain Fitness in Pseudomonas simiae WCS417 around PS417_03605

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03600 and PS417_03605 overlap by 4 nucleotidesPS417_03605 and PS417_03610 are separated by 0 nucleotidesPS417_03610 and PS417_03615 overlap by 7 nucleotides PS417_03600: PS417_03600 - glutamyl-tRNA reductase, at 818,739 to 820,028 _03600 PS417_03605: PS417_03605 - peptide chain release factor 1, at 820,025 to 821,107 _03605 PS417_03610: PS417_03610 - SAM-dependent methyltransferase, at 821,108 to 821,938 _03610 PS417_03615: PS417_03615 - molybdopterin-synthase adenylyltransferase, at 821,932 to 822,687 _03615 Position (kb) 820 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1at 820.001 kb on + strandat 821.105 kb on + strandat 821.105 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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820,001 + +0.1
821,105 + -3.6
821,105 + +0.7

Or see this region's nucleotide sequence