Experiment: soil sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00305 and PS417_00310 are separated by 21 nucleotides PS417_00310 and PS417_00315 are separated by 35 nucleotides PS417_00315 and PS417_00320 are separated by 6 nucleotides
PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878
_00305
PS417_00310: PS417_00310 - cysteine synthase, at 61,900 to 62,451
_00310
PS417_00315: PS417_00315 - MFS transporter, at 62,487 to 63,374
_00315
PS417_00320: PS417_00320 - hypothetical protein, at 63,381 to 63,584
_00320
Position (kb) 61
62
63 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.255 kb on + strand, within PS417_00305 at 61.255 kb on + strand, within PS417_00305 at 61.255 kb on + strand, within PS417_00305 at 61.255 kb on + strand at 61.256 kb on - strand, within PS417_00305 at 61.256 kb on - strand, within PS417_00305 at 61.447 kb on + strand, within PS417_00305 at 61.448 kb on - strand, within PS417_00305 at 61.471 kb on + strand, within PS417_00305 at 61.472 kb on - strand, within PS417_00305 at 61.475 kb on + strand, within PS417_00305 at 61.475 kb on + strand, within PS417_00305 at 61.517 kb on - strand, within PS417_00305 at 61.519 kb on + strand, within PS417_00305 at 61.520 kb on - strand, within PS417_00305 at 61.549 kb on + strand, within PS417_00305 at 61.550 kb on - strand, within PS417_00305 at 61.663 kb on + strand, within PS417_00305 at 61.994 kb on - strand, within PS417_00310 at 61.994 kb on - strand, within PS417_00310 at 62.151 kb on - strand, within PS417_00310 at 62.238 kb on + strand, within PS417_00310 at 62.239 kb on - strand, within PS417_00310 at 62.239 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.344 kb on - strand, within PS417_00310 at 62.449 kb on + strand at 62.453 kb on + strand at 62.505 kb on + strand at 62.505 kb on + strand at 62.505 kb on + strand at 62.506 kb on - strand at 62.508 kb on + strand at 62.537 kb on - strand at 62.537 kb on - strand at 62.537 kb on - strand at 62.661 kb on + strand, within PS417_00315 at 62.816 kb on - strand, within PS417_00315 at 62.931 kb on + strand, within PS417_00315 at 63.124 kb on - strand, within PS417_00315 at 63.124 kb on - strand, within PS417_00315 at 63.171 kb on + strand, within PS417_00315 at 63.172 kb on - strand, within PS417_00315 at 63.234 kb on - strand, within PS417_00315 at 63.364 kb on - strand at 63.364 kb on - strand at 63.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB remove 61,069 + PS417_00305 0.49 -0.6 61,069 + PS417_00305 0.49 -2.5 61,069 + PS417_00305 0.49 -2.6 61,070 - PS417_00305 0.49 -0.2 61,070 - PS417_00305 0.49 -4.9 61,070 - PS417_00305 0.49 -2.6 61,255 + PS417_00305 0.61 -0.3 61,255 + PS417_00305 0.61 -1.9 61,255 + PS417_00305 0.61 -2.6 61,255 + +0.8 61,256 - PS417_00305 0.61 -1.2 61,256 - PS417_00305 0.61 -1.8 61,447 + PS417_00305 0.73 -3.6 61,448 - PS417_00305 0.73 -2.5 61,471 + PS417_00305 0.74 +0.6 61,472 - PS417_00305 0.74 -3.9 61,475 + PS417_00305 0.75 +0.5 61,475 + PS417_00305 0.75 +1.0 61,517 - PS417_00305 0.77 -2.0 61,519 + PS417_00305 0.77 -1.3 61,520 - PS417_00305 0.77 -0.3 61,549 + PS417_00305 0.79 +0.2 61,550 - PS417_00305 0.79 -0.9 61,663 + PS417_00305 0.86 -0.3 61,994 - PS417_00310 0.17 -2.0 61,994 - PS417_00310 0.17 -1.5 62,151 - PS417_00310 0.45 -1.8 62,238 + PS417_00310 0.61 -0.7 62,239 - PS417_00310 0.61 -0.7 62,239 - PS417_00310 0.61 +0.5 62,264 - PS417_00310 0.66 -3.1 62,264 - PS417_00310 0.66 -0.9 62,264 - PS417_00310 0.66 -1.5 62,344 - PS417_00310 0.80 -0.3 62,449 + +0.2 62,453 + +1.3 62,505 + +0.1 62,505 + -0.8 62,505 + -1.4 62,506 - -1.7 62,508 + -1.5 62,537 - -0.6 62,537 - -1.9 62,537 - -1.5 62,661 + PS417_00315 0.20 +0.8 62,816 - PS417_00315 0.37 -1.6 62,931 + PS417_00315 0.50 -2.8 63,124 - PS417_00315 0.72 -1.1 63,124 - PS417_00315 0.72 -2.0 63,171 + PS417_00315 0.77 -1.5 63,172 - PS417_00315 0.77 -1.4 63,234 - PS417_00315 0.84 -2.2 63,364 - -1.8 63,364 - -1.4 63,364 - -2.2
Or see this region's nucleotide sequence