Experiment: soil sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01360 and PS417_01365 are separated by 20 nucleotides PS417_01365 and PS417_01370 are separated by 3 nucleotides PS417_01370 and PS417_01375 are separated by 14 nucleotides PS417_01375 and PS417_01380 are separated by 37 nucleotides
PS417_01360: PS417_01360 - 4-oxalocrotonate tautomerase, at 297,612 to 297,815
_01360
PS417_01365: PS417_01365 - 3-oxoacyl-ACP reductase, at 297,836 to 298,537
_01365
PS417_01370: PS417_01370 - peptidase M48, at 298,541 to 300,118
_01370
PS417_01375: PS417_01375 - hypothetical protein, at 300,133 to 300,498
_01375
PS417_01380: PS417_01380 - nucleotide cyclase, at 300,536 to 301,876
_01380
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 297.555 kb on + strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.651 kb on - strand, within PS417_01360 at 297.771 kb on + strand, within PS417_01360 at 298.100 kb on + strand at 298.154 kb on + strand, within PS417_01365 at 298.154 kb on + strand, within PS417_01365 at 298.509 kb on + strand at 298.510 kb on - strand at 298.579 kb on + strand at 298.579 kb on + strand at 298.656 kb on - strand at 298.860 kb on + strand, within PS417_01370 at 298.971 kb on + strand, within PS417_01370 at 298.971 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.123 kb on - strand, within PS417_01370 at 299.455 kb on - strand, within PS417_01370 at 299.642 kb on + strand, within PS417_01370 at 299.642 kb on + strand, within PS417_01370 at 299.642 kb on + strand, within PS417_01370 at 299.643 kb on - strand, within PS417_01370 at 299.643 kb on - strand at 299.643 kb on - strand, within PS417_01370 at 299.841 kb on + strand, within PS417_01370 at 299.860 kb on + strand, within PS417_01370 at 299.914 kb on - strand, within PS417_01370 at 299.914 kb on - strand, within PS417_01370 at 299.955 kb on + strand, within PS417_01370 at 299.956 kb on - strand, within PS417_01370 at 299.956 kb on - strand, within PS417_01370 at 299.956 kb on - strand, within PS417_01370 at 299.958 kb on + strand, within PS417_01370 at 299.959 kb on - strand, within PS417_01370 at 299.977 kb on + strand at 299.985 kb on + strand at 299.986 kb on - strand at 299.986 kb on - strand at 299.986 kb on - strand at 299.986 kb on - strand at 300.105 kb on - strand at 300.134 kb on + strand at 300.135 kb on - strand at 300.217 kb on + strand, within PS417_01375 at 300.320 kb on + strand, within PS417_01375 at 300.320 kb on + strand, within PS417_01375 at 300.320 kb on + strand, within PS417_01375 at 300.320 kb on + strand, within PS417_01375 at 300.321 kb on - strand at 300.381 kb on + strand, within PS417_01375 at 300.596 kb on + strand at 300.596 kb on + strand at 300.597 kb on - strand at 300.865 kb on - strand, within PS417_01380 at 301.072 kb on + strand, within PS417_01380 at 301.073 kb on - strand, within PS417_01380 at 301.073 kb on - strand, within PS417_01380 at 301.074 kb on + strand, within PS417_01380 at 301.075 kb on - strand, within PS417_01380
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB remove 297,555 + -0.8 297,555 + +0.3 297,555 + -1.7 297,651 - PS417_01360 0.19 -0.9 297,771 + PS417_01360 0.78 -0.0 298,100 + +1.8 298,154 + PS417_01365 0.45 +0.3 298,154 + PS417_01365 0.45 +0.5 298,509 + +0.3 298,510 - -0.6 298,579 + -0.1 298,579 + +0.6 298,656 - +0.3 298,860 + PS417_01370 0.20 -0.3 298,971 + PS417_01370 0.27 +0.8 298,971 + PS417_01370 0.27 +1.3 299,122 + PS417_01370 0.37 +0.6 299,122 + PS417_01370 0.37 +1.2 299,122 + PS417_01370 0.37 -0.1 299,122 + PS417_01370 0.37 -0.9 299,123 - PS417_01370 0.37 +0.2 299,455 - PS417_01370 0.58 +0.3 299,642 + PS417_01370 0.70 +2.2 299,642 + PS417_01370 0.70 +0.2 299,642 + PS417_01370 0.70 +1.6 299,643 - PS417_01370 0.70 +0.4 299,643 - -0.1 299,643 - PS417_01370 0.70 +0.8 299,841 + PS417_01370 0.82 +0.3 299,860 + PS417_01370 0.84 -0.7 299,914 - PS417_01370 0.87 -0.4 299,914 - PS417_01370 0.87 +0.6 299,955 + PS417_01370 0.90 +1.1 299,956 - PS417_01370 0.90 -0.1 299,956 - PS417_01370 0.90 -2.4 299,956 - PS417_01370 0.90 +0.0 299,958 + PS417_01370 0.90 -1.0 299,959 - PS417_01370 0.90 +1.0 299,977 + -1.1 299,985 + -0.4 299,986 - +0.5 299,986 - -1.1 299,986 - -1.1 299,986 - +1.0 300,105 - -0.3 300,134 + -0.9 300,135 - +2.5 300,217 + PS417_01375 0.23 +1.2 300,320 + PS417_01375 0.51 -1.0 300,320 + PS417_01375 0.51 +2.0 300,320 + PS417_01375 0.51 +0.6 300,320 + PS417_01375 0.51 -0.2 300,321 - -0.1 300,381 + PS417_01375 0.68 -1.4 300,596 + -0.1 300,596 + -0.7 300,597 - -0.6 300,865 - PS417_01380 0.25 +0.8 301,072 + PS417_01380 0.40 +0.3 301,073 - PS417_01380 0.40 +1.9 301,073 - PS417_01380 0.40 +0.4 301,074 + PS417_01380 0.40 -0.3 301,075 - PS417_01380 0.40 +1.3
Or see this region's nucleotide sequence