Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00295 and PS417_00300 are separated by 367 nucleotides PS417_00300 and PS417_00305 are separated by 58 nucleotides
PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738
_00295
PS417_00300: PS417_00300 - cytochrome B559 subunit alpha, at 59,106 to 60,233
_00300
PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878
_00305
Position (kb) 59
60
61 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 58.256 kb on + strand, within PS417_00295 at 58.364 kb on - strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.404 kb on + strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.573 kb on - strand, within PS417_00295 at 58.761 kb on + strand at 58.762 kb on - strand at 58.783 kb on + strand at 58.784 kb on - strand at 58.784 kb on - strand at 58.792 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.875 kb on + strand at 58.962 kb on + strand at 58.985 kb on - strand at 59.030 kb on + strand at 59.031 kb on - strand at 59.038 kb on - strand at 59.187 kb on - strand at 59.439 kb on + strand, within PS417_00300 at 59.439 kb on + strand, within PS417_00300 at 59.440 kb on - strand, within PS417_00300 at 59.499 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.589 kb on + strand, within PS417_00300 at 59.589 kb on + strand, within PS417_00300 at 59.590 kb on - strand, within PS417_00300 at 59.590 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.904 kb on - strand, within PS417_00300 at 59.949 kb on + strand, within PS417_00300 at 59.949 kb on + strand, within PS417_00300 at 59.950 kb on - strand, within PS417_00300 at 60.147 kb on + strand at 60.147 kb on + strand at 60.194 kb on + strand at 60.236 kb on + strand at 60.237 kb on - strand at 60.400 kb on + strand at 60.730 kb on + strand, within PS417_00305 at 60.731 kb on - strand, within PS417_00305 at 60.731 kb on - strand, within PS417_00305 at 60.751 kb on + strand, within PS417_00305 at 60.751 kb on + strand, within PS417_00305 at 60.752 kb on - strand, within PS417_00305 at 60.752 kb on - strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 58,256 + PS417_00295 0.25 -1.4 58,364 - PS417_00295 0.42 -2.5 58,365 + PS417_00295 0.42 -0.8 58,365 + PS417_00295 0.42 -1.3 58,366 - PS417_00295 0.42 -0.6 58,366 - PS417_00295 0.42 -0.2 58,404 + PS417_00295 0.48 -0.8 58,405 - PS417_00295 0.48 -1.2 58,405 - PS417_00295 0.48 -2.0 58,573 - PS417_00295 0.74 -1.3 58,761 + -0.3 58,762 - -0.2 58,783 + -0.6 58,784 - +1.9 58,784 - -0.9 58,792 + -0.7 58,794 + -0.4 58,794 + -0.4 58,794 + -0.0 58,794 + -2.0 58,875 + +0.7 58,962 + -0.3 58,985 - +0.4 59,030 + -0.9 59,031 - -1.4 59,038 - +0.5 59,187 - -1.1 59,439 + PS417_00300 0.30 -2.2 59,439 + PS417_00300 0.30 -0.7 59,440 - PS417_00300 0.30 -3.6 59,499 + PS417_00300 0.35 -1.2 59,505 + PS417_00300 0.35 -2.5 59,505 + PS417_00300 0.35 -3.4 59,505 + PS417_00300 0.35 -3.0 59,589 + PS417_00300 0.43 -1.9 59,589 + PS417_00300 0.43 -3.4 59,590 - PS417_00300 0.43 -1.2 59,590 - PS417_00300 0.43 -1.2 59,764 - PS417_00300 0.58 -1.3 59,764 - PS417_00300 0.58 -4.9 59,764 - PS417_00300 0.58 -1.7 59,764 - PS417_00300 0.58 -1.8 59,904 - PS417_00300 0.71 -1.7 59,949 + PS417_00300 0.75 -1.5 59,949 + PS417_00300 0.75 -0.6 59,950 - PS417_00300 0.75 -1.8 60,147 + +0.9 60,147 + -2.2 60,194 + -0.8 60,236 + -2.0 60,237 - -1.7 60,400 + -1.3 60,730 + PS417_00305 0.28 +0.7 60,731 - PS417_00305 0.28 -0.6 60,731 - PS417_00305 0.28 -1.8 60,751 + PS417_00305 0.29 -2.1 60,751 + PS417_00305 0.29 -1.5 60,752 - PS417_00305 0.29 -1.5 60,752 - PS417_00305 0.29 -1.8 61,069 + PS417_00305 0.49 -1.3 61,069 + PS417_00305 0.49 -3.4 61,069 + PS417_00305 0.49 -2.1 61,070 - PS417_00305 0.49 -2.5 61,070 - PS417_00305 0.49 -0.1 61,070 - PS417_00305 0.49 -1.8
Or see this region's nucleotide sequence