Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02845 and PS417_02850 overlap by 4 nucleotides PS417_02850 and PS417_02855 overlap by 4 nucleotides PS417_02855 and PS417_02860 are separated by 23 nucleotides
PS417_02845: PS417_02845 - ABC transporter permease, at 649,583 to 650,593
_02845
PS417_02850: PS417_02850 - iron ABC transporter substrate-binding protein, at 650,590 to 651,537
_02850
PS417_02855: PS417_02855 - histidinol phosphatase, at 651,534 to 652,316
_02855
PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448
_02860
Position (kb) 650
651
652 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 649.607 kb on - strand at 650.182 kb on + strand at 650.417 kb on - strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.467 kb on - strand, within PS417_02845 at 650.568 kb on - strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.663 kb on + strand at 650.677 kb on - strand at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.853 kb on + strand, within PS417_02850 at 650.936 kb on + strand, within PS417_02850 at 651.015 kb on + strand, within PS417_02850 at 651.066 kb on + strand, within PS417_02850 at 651.067 kb on - strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.131 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.464 kb on + strand at 651.554 kb on + strand at 651.641 kb on + strand, within PS417_02855 at 651.641 kb on + strand, within PS417_02855 at 651.678 kb on + strand, within PS417_02855 at 651.785 kb on - strand, within PS417_02855 at 651.969 kb on - strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.350 kb on + strand at 652.351 kb on - strand at 652.351 kb on - strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.411 kb on - strand at 652.425 kb on + strand at 652.425 kb on + strand at 652.426 kb on - strand at 652.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 649,607 - -0.3 650,182 + -0.2 650,417 - PS417_02845 0.82 +0.3 650,466 + PS417_02845 0.87 +2.1 650,466 + PS417_02845 0.87 +0.8 650,467 - PS417_02845 0.87 +1.2 650,568 - -0.5 650,570 + +0.1 650,570 + +2.6 650,570 + +0.8 650,663 + +0.5 650,677 - -1.0 650,839 + PS417_02850 0.26 +2.1 650,839 + PS417_02850 0.26 +0.5 650,839 + PS417_02850 0.26 -0.2 650,839 + PS417_02850 0.26 +0.5 650,839 + PS417_02850 0.26 +0.1 650,840 - PS417_02850 0.26 +1.6 650,840 - PS417_02850 0.26 -1.2 650,840 - PS417_02850 0.26 -0.1 650,840 - PS417_02850 0.26 -0.6 650,853 + PS417_02850 0.28 -2.0 650,936 + PS417_02850 0.36 +1.0 651,015 + PS417_02850 0.45 +1.0 651,066 + PS417_02850 0.50 +0.2 651,067 - PS417_02850 0.50 +0.2 651,068 + PS417_02850 0.50 +0.5 651,068 + PS417_02850 0.50 -0.0 651,068 + PS417_02850 0.50 +1.6 651,068 + PS417_02850 0.50 -0.7 651,068 + PS417_02850 0.50 -1.0 651,069 - PS417_02850 0.51 +0.0 651,069 - PS417_02850 0.51 -0.2 651,131 + PS417_02850 0.57 -0.0 651,254 + PS417_02850 0.70 -0.1 651,254 + PS417_02850 0.70 +0.1 651,464 + -1.1 651,554 + -0.4 651,641 + PS417_02855 0.14 -0.3 651,641 + PS417_02855 0.14 -1.1 651,678 + PS417_02855 0.18 +0.1 651,785 - PS417_02855 0.32 -0.4 651,969 - PS417_02855 0.56 +0.8 652,145 + PS417_02855 0.78 -0.3 652,145 + PS417_02855 0.78 +2.0 652,350 + +0.1 652,351 - +0.6 652,351 - -0.3 652,410 + -0.3 652,410 + -3.8 652,410 + +0.1 652,411 - -0.1 652,425 + -0.1 652,425 + +0.1 652,426 - +1.5 652,512 + +0.1
Or see this region's nucleotide sequence