Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18465 and PS417_18470 are separated by 126 nucleotides PS417_18470 and PS417_18475 are separated by 15 nucleotides PS417_18475 and PS417_18480 are separated by 7 nucleotides PS417_18480 and PS417_18485 overlap by 4 nucleotides
PS417_18465: PS417_18465 - histidine kinase, at 4,014,875 to 4,016,275
_18465
PS417_18470: PS417_18470 - hypothetical protein, at 4,016,402 to 4,016,626
_18470
PS417_18475: PS417_18475 - Pyrrolidone-carboxylate peptidase, at 4,016,642 to 4,017,283
_18475
PS417_18480: PS417_18480 - permease, at 4,017,291 to 4,018,241
_18480
PS417_18485: PS417_18485 - membrane protein, at 4,018,238 to 4,018,954
_18485
Position (kb) 4016
4017
4018 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4015.716 kb on - strand, within PS417_18465 at 4015.991 kb on + strand, within PS417_18465 at 4015.991 kb on + strand, within PS417_18465 at 4016.094 kb on + strand, within PS417_18465 at 4016.095 kb on - strand, within PS417_18465 at 4016.095 kb on - strand, within PS417_18465 at 4016.295 kb on + strand at 4016.317 kb on + strand at 4016.409 kb on + strand at 4016.409 kb on + strand at 4016.416 kb on - strand at 4016.416 kb on - strand at 4016.549 kb on + strand, within PS417_18470 at 4016.549 kb on + strand, within PS417_18470 at 4016.550 kb on - strand, within PS417_18470 at 4016.581 kb on - strand, within PS417_18470 at 4016.683 kb on + strand at 4016.683 kb on + strand at 4016.684 kb on - strand at 4016.728 kb on + strand, within PS417_18475 at 4016.729 kb on - strand, within PS417_18475 at 4016.729 kb on - strand, within PS417_18475 at 4016.729 kb on - strand, within PS417_18475 at 4017.272 kb on + strand at 4017.312 kb on + strand at 4017.312 kb on + strand at 4017.313 kb on - strand at 4017.317 kb on + strand at 4017.496 kb on + strand, within PS417_18480 at 4017.594 kb on + strand, within PS417_18480 at 4017.595 kb on - strand, within PS417_18480 at 4017.598 kb on + strand, within PS417_18480 at 4017.598 kb on + strand, within PS417_18480 at 4017.599 kb on - strand, within PS417_18480 at 4017.599 kb on - strand, within PS417_18480 at 4017.599 kb on - strand, within PS417_18480 at 4017.599 kb on - strand at 4017.599 kb on - strand at 4017.599 kb on - strand, within PS417_18480 at 4017.635 kb on + strand, within PS417_18480 at 4017.637 kb on + strand, within PS417_18480 at 4017.637 kb on + strand, within PS417_18480 at 4017.637 kb on + strand, within PS417_18480 at 4017.637 kb on + strand, within PS417_18480 at 4017.638 kb on - strand, within PS417_18480 at 4017.638 kb on - strand at 4017.638 kb on - strand, within PS417_18480 at 4017.638 kb on - strand, within PS417_18480 at 4017.638 kb on - strand, within PS417_18480 at 4017.690 kb on + strand, within PS417_18480 at 4017.956 kb on + strand, within PS417_18480 at 4017.956 kb on + strand, within PS417_18480 at 4017.956 kb on + strand, within PS417_18480 at 4017.957 kb on - strand, within PS417_18480 at 4017.957 kb on - strand, within PS417_18480 at 4017.957 kb on - strand, within PS417_18480 at 4018.194 kb on + strand at 4018.217 kb on - strand at 4018.222 kb on + strand at 4018.223 kb on - strand at 4018.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 4,015,716 - PS417_18465 0.60 -0.7 4,015,991 + PS417_18465 0.80 -0.2 4,015,991 + PS417_18465 0.80 -0.1 4,016,094 + PS417_18465 0.87 +0.4 4,016,095 - PS417_18465 0.87 +0.4 4,016,095 - PS417_18465 0.87 -2.3 4,016,295 + -1.9 4,016,317 + +1.8 4,016,409 + -0.9 4,016,409 + +0.9 4,016,416 - -0.0 4,016,416 - -0.1 4,016,549 + PS417_18470 0.65 +1.0 4,016,549 + PS417_18470 0.65 -2.0 4,016,550 - PS417_18470 0.66 +0.1 4,016,581 - PS417_18470 0.80 -2.8 4,016,683 + -0.2 4,016,683 + -1.9 4,016,684 - -0.2 4,016,728 + PS417_18475 0.13 +0.2 4,016,729 - PS417_18475 0.14 -0.7 4,016,729 - PS417_18475 0.14 -0.7 4,016,729 - PS417_18475 0.14 +0.1 4,017,272 + -0.3 4,017,312 + -0.7 4,017,312 + +0.2 4,017,313 - -0.6 4,017,317 + +0.6 4,017,496 + PS417_18480 0.22 +0.5 4,017,594 + PS417_18480 0.32 -0.3 4,017,595 - PS417_18480 0.32 -0.6 4,017,598 + PS417_18480 0.32 +0.9 4,017,598 + PS417_18480 0.32 +0.4 4,017,599 - PS417_18480 0.32 +2.6 4,017,599 - PS417_18480 0.32 +0.4 4,017,599 - PS417_18480 0.32 +0.0 4,017,599 - +2.6 4,017,599 - +1.3 4,017,599 - PS417_18480 0.32 +1.0 4,017,635 + PS417_18480 0.36 -0.8 4,017,637 + PS417_18480 0.36 -0.2 4,017,637 + PS417_18480 0.36 -1.4 4,017,637 + PS417_18480 0.36 +0.4 4,017,637 + PS417_18480 0.36 +1.1 4,017,638 - PS417_18480 0.36 -0.6 4,017,638 - +0.5 4,017,638 - PS417_18480 0.36 -3.6 4,017,638 - PS417_18480 0.36 -0.1 4,017,638 - PS417_18480 0.36 -0.2 4,017,690 + PS417_18480 0.42 +0.2 4,017,956 + PS417_18480 0.70 +0.1 4,017,956 + PS417_18480 0.70 -0.1 4,017,956 + PS417_18480 0.70 +1.3 4,017,957 - PS417_18480 0.70 +0.1 4,017,957 - PS417_18480 0.70 +1.1 4,017,957 - PS417_18480 0.70 +0.3 4,018,194 + -0.1 4,018,217 - -0.3 4,018,222 + -0.6 4,018,223 - -0.3 4,018,235 + +1.4
Or see this region's nucleotide sequence