Strain Fitness in Pseudomonas simiae WCS417 around PS417_00840

Experiment: soil sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00835 and PS417_00840 are separated by 419 nucleotidesPS417_00840 and PS417_00845 are separated by 76 nucleotidesPS417_00845 and PS417_00850 are separated by 69 nucleotidesPS417_00850 and PS417_00855 overlap by 38 nucleotides PS417_00835: PS417_00835 - hypothetical protein, at 184,797 to 185,834 _00835 PS417_00840: PS417_00840 - hypothetical protein, at 186,254 to 190,063 _00840 PS417_00845: PS417_00845 - transcriptional regulator, at 190,140 to 190,505 _00845 PS417_00850: PS417_00850 - hypothetical protein, at 190,575 to 190,763 _00850 PS417_00855: PS417_00855 - chromosome segregation protein SMC, at 190,726 to 191,670 _00855 Position (kb) 186 187 188 189 190 191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 185.425 kb on - strand, within PS417_00835at 185.466 kb on + strand, within PS417_00835at 185.667 kb on - strand, within PS417_00835at 185.667 kb on - strand, within PS417_00835at 185.670 kb on + strand, within PS417_00835at 185.721 kb on - strand, within PS417_00835at 185.845 kb on + strandat 185.978 kb on + strandat 185.978 kb on + strandat 185.978 kb on + strandat 185.979 kb on - strandat 186.056 kb on + strandat 186.117 kb on + strandat 186.118 kb on - strandat 186.121 kb on + strandat 186.136 kb on - strandat 186.186 kb on - strandat 186.186 kb on - strandat 186.211 kb on - strandat 186.222 kb on - strandat 186.240 kb on - strandat 186.321 kb on + strandat 186.394 kb on + strandat 186.394 kb on + strandat 186.395 kb on - strandat 186.395 kb on - strandat 186.395 kb on - strandat 186.483 kb on + strandat 186.483 kb on + strandat 186.483 kb on + strandat 186.484 kb on - strandat 186.484 kb on - strandat 186.487 kb on + strandat 186.488 kb on - strandat 186.488 kb on - strandat 186.488 kb on - strandat 186.509 kb on - strandat 186.525 kb on - strandat 186.525 kb on - strandat 186.525 kb on - strandat 186.579 kb on + strandat 186.579 kb on + strandat 186.579 kb on + strandat 186.579 kb on + strandat 186.651 kb on + strand, within PS417_00840at 186.687 kb on + strand, within PS417_00840at 186.687 kb on + strand, within PS417_00840at 186.688 kb on - strand, within PS417_00840at 186.688 kb on - strand, within PS417_00840at 186.760 kb on + strand, within PS417_00840at 186.761 kb on - strand, within PS417_00840at 186.763 kb on - strand, within PS417_00840at 186.826 kb on + strand, within PS417_00840at 187.032 kb on + strand, within PS417_00840at 187.032 kb on + strand, within PS417_00840at 187.033 kb on - strand, within PS417_00840at 187.172 kb on - strand, within PS417_00840at 187.246 kb on + strand, within PS417_00840at 187.395 kb on + strand, within PS417_00840at 187.566 kb on + strand, within PS417_00840at 187.765 kb on - strand, within PS417_00840at 187.778 kb on - strand, within PS417_00840at 188.109 kb on + strand, within PS417_00840at 188.220 kb on + strand, within PS417_00840at 188.221 kb on - strand, within PS417_00840at 188.239 kb on - strand, within PS417_00840at 188.581 kb on + strand, within PS417_00840at 188.582 kb on - strand, within PS417_00840at 188.776 kb on - strand, within PS417_00840at 189.055 kb on + strand, within PS417_00840at 189.201 kb on + strand, within PS417_00840at 189.206 kb on - strand, within PS417_00840at 189.238 kb on + strand, within PS417_00840at 189.406 kb on - strand, within PS417_00840at 189.516 kb on + strand, within PS417_00840at 189.535 kb on + strand, within PS417_00840at 189.536 kb on - strand, within PS417_00840at 189.612 kb on + strand, within PS417_00840at 189.762 kb on - strandat 189.762 kb on - strandat 189.854 kb on - strandat 189.921 kb on + strandat 189.922 kb on - strandat 190.010 kb on + strandat 190.011 kb on - strandat 190.142 kb on - strandat 190.366 kb on + strand, within PS417_00845at 190.437 kb on + strand, within PS417_00845at 190.531 kb on - strandat 190.577 kb on - strandat 190.856 kb on + strand, within PS417_00855at 190.942 kb on + strand, within PS417_00855at 190.990 kb on + strand, within PS417_00855

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB
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185,425 - PS417_00835 0.61 +0.3
185,466 + PS417_00835 0.64 -0.5
185,667 - PS417_00835 0.84 +1.9
185,667 - PS417_00835 0.84 -2.3
185,670 + PS417_00835 0.84 +0.2
185,721 - PS417_00835 0.89 -1.1
185,845 + +0.9
185,978 + -1.9
185,978 + +0.3
185,978 + -0.2
185,979 - +2.4
186,056 + -1.1
186,117 + -1.0
186,118 - -1.5
186,121 + +0.2
186,136 - -0.5
186,186 - -1.0
186,186 - -0.9
186,211 - +0.1
186,222 - -1.2
186,240 - +0.6
186,321 + +1.8
186,394 + -1.1
186,394 + +1.5
186,395 - -0.9
186,395 - -1.3
186,395 - +2.6
186,483 + +0.7
186,483 + -2.6
186,483 + +0.1
186,484 - +1.7
186,484 - +2.0
186,487 + -2.5
186,488 - -0.0
186,488 - +1.6
186,488 - +0.3
186,509 - +0.6
186,525 - -0.5
186,525 - -0.1
186,525 - -1.4
186,579 + -0.1
186,579 + +1.9
186,579 + +0.8
186,579 + -0.1
186,651 + PS417_00840 0.10 -0.4
186,687 + PS417_00840 0.11 +0.7
186,687 + PS417_00840 0.11 +1.1
186,688 - PS417_00840 0.11 -3.4
186,688 - PS417_00840 0.11 -0.4
186,760 + PS417_00840 0.13 +0.1
186,761 - PS417_00840 0.13 +0.4
186,763 - PS417_00840 0.13 -0.0
186,826 + PS417_00840 0.15 +0.4
187,032 + PS417_00840 0.20 +1.6
187,032 + PS417_00840 0.20 +5.6
187,033 - PS417_00840 0.20 +0.2
187,172 - PS417_00840 0.24 +0.1
187,246 + PS417_00840 0.26 -0.9
187,395 + PS417_00840 0.30 +6.3
187,566 + PS417_00840 0.34 +0.2
187,765 - PS417_00840 0.40 +1.3
187,778 - PS417_00840 0.40 -1.2
188,109 + PS417_00840 0.49 +0.9
188,220 + PS417_00840 0.52 +0.2
188,221 - PS417_00840 0.52 -0.8
188,239 - PS417_00840 0.52 -0.7
188,581 + PS417_00840 0.61 -0.1
188,582 - PS417_00840 0.61 +0.0
188,776 - PS417_00840 0.66 -0.3
189,055 + PS417_00840 0.74 -0.1
189,201 + PS417_00840 0.77 -1.4
189,206 - PS417_00840 0.77 -0.5
189,238 + PS417_00840 0.78 +0.4
189,406 - PS417_00840 0.83 +1.1
189,516 + PS417_00840 0.86 -1.9
189,535 + PS417_00840 0.86 -3.9
189,536 - PS417_00840 0.86 +0.6
189,612 + PS417_00840 0.88 +1.2
189,762 - -0.6
189,762 - -0.4
189,854 - +0.7
189,921 + -0.4
189,922 - -0.4
190,010 + +0.2
190,011 - -2.2
190,142 - -0.1
190,366 + PS417_00845 0.62 -0.0
190,437 + PS417_00845 0.81 -1.1
190,531 - -0.1
190,577 - -0.3
190,856 + PS417_00855 0.14 +1.8
190,942 + PS417_00855 0.23 -2.6
190,990 + PS417_00855 0.28 +1.1

Or see this region's nucleotide sequence