Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00795 and PS417_00800 overlap by 4 nucleotides PS417_00800 and PS417_00805 are separated by 112 nucleotides PS417_00805 and PS417_00810 are separated by 152 nucleotides PS417_00810 and PS417_00815 overlap by 4 nucleotides
PS417_00795: PS417_00795 - lipoprotein, at 176,884 to 177,246
_00795
PS417_00800: PS417_00800 - lipoprotein, at 177,243 to 177,893
_00800
PS417_00805: PS417_00805 - hypothetical protein, at 178,006 to 179,646
_00805
PS417_00810: PS417_00810 - RNA polymerase sigma factor, at 179,799 to 180,371
_00810
PS417_00815: PS417_00815 - hypothetical protein, at 180,368 to 180,961
_00815
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 177.119 kb on - strand, within PS417_00795 at 177.119 kb on - strand, within PS417_00795 at 177.197 kb on - strand, within PS417_00795 at 177.240 kb on + strand at 177.241 kb on - strand at 177.322 kb on - strand, within PS417_00800 at 177.331 kb on - strand, within PS417_00800 at 177.331 kb on - strand, within PS417_00800 at 177.331 kb on - strand at 177.403 kb on - strand, within PS417_00800 at 177.448 kb on - strand, within PS417_00800 at 177.448 kb on - strand, within PS417_00800 at 177.451 kb on - strand, within PS417_00800 at 177.573 kb on + strand, within PS417_00800 at 177.573 kb on + strand, within PS417_00800 at 177.574 kb on - strand, within PS417_00800 at 177.574 kb on - strand, within PS417_00800 at 177.603 kb on + strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 178.157 kb on + strand at 178.265 kb on - strand, within PS417_00805 at 178.358 kb on + strand, within PS417_00805 at 178.426 kb on + strand, within PS417_00805 at 178.426 kb on + strand, within PS417_00805 at 178.702 kb on + strand, within PS417_00805 at 178.703 kb on - strand, within PS417_00805 at 178.703 kb on - strand, within PS417_00805 at 178.953 kb on + strand, within PS417_00805 at 178.954 kb on - strand, within PS417_00805 at 178.996 kb on - strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 178.999 kb on + strand, within PS417_00805 at 179.000 kb on - strand, within PS417_00805 at 179.000 kb on - strand, within PS417_00805 at 179.047 kb on + strand, within PS417_00805 at 179.048 kb on - strand, within PS417_00805 at 179.048 kb on - strand, within PS417_00805 at 179.053 kb on + strand, within PS417_00805 at 179.053 kb on + strand, within PS417_00805 at 179.054 kb on - strand, within PS417_00805 at 179.387 kb on - strand, within PS417_00805 at 179.529 kb on + strand at 179.609 kb on + strand at 179.796 kb on + strand at 179.796 kb on + strand at 179.796 kb on + strand at 179.797 kb on - strand at 179.797 kb on - strand at 179.797 kb on - strand at 179.883 kb on + strand, within PS417_00810 at 179.883 kb on + strand, within PS417_00810 at 180.105 kb on + strand, within PS417_00810 at 180.105 kb on + strand, within PS417_00810
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 177,119 - PS417_00795 0.65 +0.3 177,119 - PS417_00795 0.65 -0.7 177,197 - PS417_00795 0.86 -0.3 177,240 + -1.5 177,241 - +0.5 177,322 - PS417_00800 0.12 +1.9 177,331 - PS417_00800 0.14 -0.2 177,331 - PS417_00800 0.14 +1.0 177,331 - +1.9 177,403 - PS417_00800 0.25 +3.2 177,448 - PS417_00800 0.31 -0.1 177,448 - PS417_00800 0.31 -1.4 177,451 - PS417_00800 0.32 -1.9 177,573 + PS417_00800 0.51 +1.3 177,573 + PS417_00800 0.51 -0.6 177,574 - PS417_00800 0.51 -0.5 177,574 - PS417_00800 0.51 -1.4 177,603 + PS417_00800 0.55 -1.3 177,604 - PS417_00800 0.55 +0.0 177,604 - PS417_00800 0.55 -1.1 177,604 - PS417_00800 0.55 +0.1 177,604 - PS417_00800 0.55 -2.0 177,604 - PS417_00800 0.55 +0.7 178,157 + -0.6 178,265 - PS417_00805 0.16 +6.4 178,358 + PS417_00805 0.21 +1.3 178,426 + PS417_00805 0.26 +0.4 178,426 + PS417_00805 0.26 +0.2 178,702 + PS417_00805 0.42 +3.3 178,703 - PS417_00805 0.42 -0.5 178,703 - PS417_00805 0.42 -1.7 178,953 + PS417_00805 0.58 -1.2 178,954 - PS417_00805 0.58 -1.2 178,996 - PS417_00805 0.60 -0.6 178,999 + PS417_00805 0.61 +0.6 178,999 + PS417_00805 0.61 +0.8 178,999 + PS417_00805 0.61 +0.1 179,000 - PS417_00805 0.61 +0.3 179,000 - PS417_00805 0.61 -2.8 179,047 + PS417_00805 0.63 -0.2 179,048 - PS417_00805 0.63 +0.1 179,048 - PS417_00805 0.63 -1.4 179,053 + PS417_00805 0.64 -0.1 179,053 + PS417_00805 0.64 -0.6 179,054 - PS417_00805 0.64 -0.8 179,387 - PS417_00805 0.84 -0.5 179,529 + -1.1 179,609 + +0.0 179,796 + -2.9 179,796 + -0.2 179,796 + -0.3 179,797 - +1.4 179,797 - -0.1 179,797 - -0.7 179,883 + PS417_00810 0.15 +0.1 179,883 + PS417_00810 0.15 -0.2 180,105 + PS417_00810 0.53 -0.1 180,105 + PS417_00810 0.53 -1.9
Or see this region's nucleotide sequence