Strain Fitness in Pseudomonas putida KT2440 around PP_4791

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4790 and PP_4791 are separated by 354 nucleotidesPP_4791 and PP_4792 are separated by 160 nucleotides PP_4790: PP_4790 - Apolipoprotein N-acyltransferase, at 5,451,470 to 5,452,987 _4790 PP_4791: PP_4791 - transposase, at 5,453,342 to 5,454,670 _4791 PP_4792: PP_4792 - conserved exported protein of unknown function, at 5,454,831 to 5,455,592 _4792 Position (kb) 5453 5454 5455Strain fitness (log2 ratio) -2 -1 0 1at 5452.969 kb on + strandat 5453.009 kb on - strandat 5453.009 kb on - strandat 5453.009 kb on - strandat 5453.009 kb on - strandat 5454.732 kb on + strandat 5454.805 kb on + strandat 5454.805 kb on + strandat 5454.806 kb on - strandat 5454.815 kb on + strandat 5454.815 kb on + strandat 5454.815 kb on + strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.816 kb on - strandat 5454.820 kb on - strandat 5454.820 kb on - strandat 5454.820 kb on - strandat 5454.835 kb on + strandat 5455.471 kb on - strand, within PP_4792at 5455.475 kb on + strand, within PP_4792at 5455.475 kb on + strand, within PP_4792at 5455.623 kb on + strandat 5455.623 kb on + strandat 5455.624 kb on - strandat 5455.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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5,452,969 + -2.1
5,453,009 - -0.1
5,453,009 - +0.5
5,453,009 - +0.3
5,453,009 - -0.1
5,454,732 + -0.7
5,454,805 + -1.5
5,454,805 + -1.7
5,454,806 - -0.2
5,454,815 + +0.6
5,454,815 + +1.3
5,454,815 + +1.0
5,454,816 - -1.0
5,454,816 - -0.4
5,454,816 - -1.7
5,454,816 - -0.3
5,454,816 - -1.4
5,454,816 - -0.1
5,454,816 - +0.7
5,454,816 - -0.7
5,454,820 - -0.8
5,454,820 - -0.7
5,454,820 - +0.7
5,454,835 + +0.8
5,455,471 - PP_4792 0.84 +0.7
5,455,475 + PP_4792 0.85 +1.3
5,455,475 + PP_4792 0.85 +0.2
5,455,623 + +0.2
5,455,623 + -1.4
5,455,624 - +0.5
5,455,624 - +0.7

Or see this region's nucleotide sequence