Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00435 and PS417_00440 are separated by 88 nucleotides PS417_00440 and PS417_00445 overlap by 4 nucleotides PS417_00445 and PS417_00450 are separated by 10 nucleotides
PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566
_00435
PS417_00440: PS417_00440 - N-acetylmuramoyl-L-alanine amidase, at 86,655 to 87,431
_00440
PS417_00445: PS417_00445 - histidine kinase, at 87,428 to 89,215
_00445
PS417_00450: PS417_00450 - chemotaxis protein CheY, at 89,226 to 90,572
_00450
Position (kb) 87
88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 86.522 kb on + strand at 86.522 kb on + strand at 86.523 kb on - strand at 86.523 kb on - strand at 86.564 kb on + strand at 86.641 kb on + strand at 86.642 kb on - strand at 86.642 kb on - strand at 86.642 kb on - strand at 86.667 kb on + strand at 86.667 kb on + strand at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.875 kb on - strand, within PS417_00440 at 86.875 kb on - strand, within PS417_00440 at 87.016 kb on - strand, within PS417_00440 at 87.039 kb on - strand, within PS417_00440 at 87.039 kb on - strand, within PS417_00440 at 87.190 kb on + strand, within PS417_00440 at 87.231 kb on + strand, within PS417_00440 at 87.231 kb on + strand, within PS417_00440 at 87.232 kb on - strand, within PS417_00440 at 87.232 kb on - strand, within PS417_00440 at 87.447 kb on + strand at 87.447 kb on + strand at 87.447 kb on + strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.478 kb on - strand at 87.600 kb on + strand at 87.753 kb on + strand, within PS417_00445 at 87.754 kb on - strand, within PS417_00445 at 87.783 kb on - strand, within PS417_00445 at 87.783 kb on - strand, within PS417_00445 at 87.783 kb on - strand, within PS417_00445 at 87.783 kb on - strand, within PS417_00445 at 88.073 kb on + strand, within PS417_00445 at 88.076 kb on + strand, within PS417_00445 at 88.150 kb on + strand, within PS417_00445 at 88.151 kb on - strand, within PS417_00445 at 88.186 kb on - strand, within PS417_00445 at 88.186 kb on - strand, within PS417_00445 at 88.296 kb on - strand, within PS417_00445 at 88.428 kb on - strand, within PS417_00445 at 88.428 kb on - strand, within PS417_00445 at 88.962 kb on + strand, within PS417_00445 at 88.962 kb on + strand, within PS417_00445 at 88.963 kb on - strand at 89.068 kb on + strand at 89.173 kb on + strand at 89.174 kb on - strand at 89.216 kb on - strand at 89.216 kb on - strand at 89.220 kb on + strand at 89.220 kb on + strand at 89.221 kb on - strand at 89.221 kb on - strand at 89.221 kb on - strand at 89.236 kb on + strand at 89.237 kb on - strand at 89.319 kb on + strand at 89.469 kb on - strand, within PS417_00450 at 89.501 kb on - strand, within PS417_00450 at 89.554 kb on + strand, within PS417_00450 at 89.554 kb on + strand, within PS417_00450 at 89.555 kb on - strand, within PS417_00450 at 90.153 kb on + strand, within PS417_00450 at 90.154 kb on - strand, within PS417_00450
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 86,522 + -0.5 86,522 + -0.5 86,523 - +0.1 86,523 - +0.2 86,564 + -0.3 86,641 + +0.1 86,642 - +0.1 86,642 - +0.2 86,642 - +0.4 86,667 + +0.2 86,667 + -0.1 86,874 + PS417_00440 0.28 +0.2 86,874 + PS417_00440 0.28 +2.4 86,874 + PS417_00440 0.28 -0.6 86,874 + PS417_00440 0.28 -1.2 86,875 - PS417_00440 0.28 -2.9 86,875 - PS417_00440 0.28 +0.1 87,016 - PS417_00440 0.46 +0.1 87,039 - PS417_00440 0.49 +0.1 87,039 - PS417_00440 0.49 +0.6 87,190 + PS417_00440 0.69 +0.5 87,231 + PS417_00440 0.74 +0.2 87,231 + PS417_00440 0.74 -0.4 87,232 - PS417_00440 0.74 -1.2 87,232 - PS417_00440 0.74 -0.1 87,447 + -0.7 87,447 + -1.0 87,447 + -1.4 87,448 - -0.2 87,448 - -1.3 87,448 - -0.5 87,448 - -1.2 87,478 - -1.5 87,600 + +0.2 87,753 + PS417_00445 0.18 -1.4 87,754 - PS417_00445 0.18 -1.8 87,783 - PS417_00445 0.20 -1.5 87,783 - PS417_00445 0.20 -0.5 87,783 - PS417_00445 0.20 -1.6 87,783 - PS417_00445 0.20 -0.8 88,073 + PS417_00445 0.36 -2.1 88,076 + PS417_00445 0.36 -2.7 88,150 + PS417_00445 0.40 -1.2 88,151 - PS417_00445 0.40 +0.3 88,186 - PS417_00445 0.42 -1.7 88,186 - PS417_00445 0.42 -3.6 88,296 - PS417_00445 0.49 -1.9 88,428 - PS417_00445 0.56 -0.8 88,428 - PS417_00445 0.56 -1.1 88,962 + PS417_00445 0.86 -0.1 88,962 + PS417_00445 0.86 -0.1 88,963 - -0.7 89,068 + -0.1 89,173 + -1.8 89,174 - -1.5 89,216 - -0.7 89,216 - +0.2 89,220 + -1.3 89,220 + +0.9 89,221 - -0.5 89,221 - -2.4 89,221 - -0.5 89,236 + +0.2 89,237 - -1.6 89,319 + +2.8 89,469 - PS417_00450 0.18 +1.3 89,501 - PS417_00450 0.20 -1.0 89,554 + PS417_00450 0.24 +0.8 89,554 + PS417_00450 0.24 +1.3 89,555 - PS417_00450 0.24 +0.6 90,153 + PS417_00450 0.69 +1.3 90,154 - PS417_00450 0.69 -0.2
Or see this region's nucleotide sequence