Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04180 and PS417_04185 are separated by 10 nucleotides PS417_04185 and PS417_04190 are separated by 152 nucleotides PS417_04190 and PS417_04195 are separated by 234 nucleotides
PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098
_04180
PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294
_04185
PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604
_04190
PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) <small>(from data)</small>, at 939,839 to 940,750
_04195
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 938.155 kb on + strand, within PS417_04185 at 938.185 kb on - strand, within PS417_04185 at 938.207 kb on - strand, within PS417_04185 at 938.207 kb on - strand, within PS417_04185 at 938.298 kb on + strand at 938.298 kb on + strand at 938.298 kb on + strand at 938.299 kb on - strand at 938.324 kb on + strand at 938.325 kb on - strand at 938.325 kb on - strand at 938.461 kb on + strand at 938.473 kb on - strand at 938.473 kb on - strand at 938.491 kb on - strand at 938.491 kb on - strand at 938.491 kb on - strand at 938.494 kb on + strand at 938.494 kb on + strand at 938.551 kb on + strand at 938.637 kb on + strand, within PS417_04190 at 938.637 kb on + strand, within PS417_04190 at 938.637 kb on + strand, within PS417_04190 at 938.638 kb on - strand, within PS417_04190 at 938.638 kb on - strand, within PS417_04190 at 938.674 kb on + strand, within PS417_04190 at 938.912 kb on + strand, within PS417_04190 at 938.977 kb on - strand, within PS417_04190 at 939.057 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.188 kb on - strand, within PS417_04190 at 939.322 kb on + strand, within PS417_04190 at 939.323 kb on - strand, within PS417_04190 at 939.323 kb on - strand, within PS417_04190 at 939.348 kb on - strand, within PS417_04190 at 939.348 kb on - strand, within PS417_04190 at 939.400 kb on - strand, within PS417_04190 at 939.400 kb on - strand, within PS417_04190 at 939.400 kb on - strand, within PS417_04190 at 939.433 kb on - strand, within PS417_04190 at 939.433 kb on - strand, within PS417_04190 at 939.607 kb on + strand at 939.607 kb on + strand at 939.608 kb on - strand at 939.608 kb on - strand at 939.608 kb on - strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.672 kb on + strand at 939.673 kb on - strand at 939.673 kb on - strand at 939.837 kb on + strand at 939.838 kb on - strand at 939.936 kb on - strand, within PS417_04195 at 940.179 kb on - strand, within PS417_04195 at 940.179 kb on - strand, within PS417_04195 at 940.374 kb on + strand, within PS417_04195 at 940.404 kb on - strand, within PS417_04195 at 940.404 kb on - strand, within PS417_04195 at 940.470 kb on - strand, within PS417_04195 at 940.517 kb on + strand, within PS417_04195
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 937,944 - PS417_04180 0.79 -1.3 937,944 - PS417_04180 0.79 -0.3 937,944 - PS417_04180 0.79 -0.6 937,944 - PS417_04180 0.79 -0.9 938,155 + PS417_04185 0.25 +0.2 938,185 - PS417_04185 0.41 -1.4 938,207 - PS417_04185 0.53 -0.4 938,207 - PS417_04185 0.53 -0.4 938,298 + -1.4 938,298 + +0.5 938,298 + -0.5 938,299 - -0.2 938,324 + +0.8 938,325 - +0.8 938,325 - -1.1 938,461 + +0.4 938,473 - +0.6 938,473 - +0.9 938,491 - -0.2 938,491 - +0.4 938,491 - +1.2 938,494 + +0.4 938,494 + -1.3 938,551 + -3.3 938,637 + PS417_04190 0.16 +1.5 938,637 + PS417_04190 0.16 -1.1 938,637 + PS417_04190 0.16 +0.1 938,638 - PS417_04190 0.16 -0.4 938,638 - PS417_04190 0.16 -0.0 938,674 + PS417_04190 0.20 +0.9 938,912 + PS417_04190 0.40 -0.4 938,977 - PS417_04190 0.46 +1.7 939,057 + PS417_04190 0.53 +0.0 939,187 + PS417_04190 0.64 +0.6 939,187 + PS417_04190 0.64 +0.9 939,187 + PS417_04190 0.64 +0.1 939,187 + PS417_04190 0.64 +0.0 939,188 - PS417_04190 0.64 +0.3 939,322 + PS417_04190 0.76 +0.9 939,323 - PS417_04190 0.76 +0.3 939,323 - PS417_04190 0.76 -2.9 939,348 - PS417_04190 0.78 +2.6 939,348 - PS417_04190 0.78 -1.7 939,400 - PS417_04190 0.82 -0.7 939,400 - PS417_04190 0.82 -0.6 939,400 - PS417_04190 0.82 +0.3 939,433 - PS417_04190 0.85 -0.2 939,433 - PS417_04190 0.85 +0.1 939,607 + -0.5 939,607 + +0.5 939,608 - -0.6 939,608 - +2.5 939,608 - -1.3 939,618 + +1.3 939,618 + +1.4 939,618 + -1.9 939,618 + -0.4 939,618 + +0.3 939,618 + +0.1 939,618 + -0.2 939,619 - -0.8 939,619 - +0.8 939,619 - -0.6 939,619 - +1.9 939,619 - -0.1 939,672 + +1.1 939,673 - -2.6 939,673 - +0.6 939,837 + -0.3 939,838 - +0.2 939,936 - PS417_04195 0.11 +0.5 940,179 - PS417_04195 0.37 -0.3 940,179 - PS417_04195 0.37 -0.6 940,374 + PS417_04195 0.59 -1.4 940,404 - PS417_04195 0.62 +0.2 940,404 - PS417_04195 0.62 -0.2 940,470 - PS417_04195 0.69 -0.9 940,517 + PS417_04195 0.74 -0.8
Or see this region's nucleotide sequence