Strain Fitness in Pseudomonas simiae WCS417 around PS417_03720

Experiment: soil sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03715 and PS417_03720 are separated by 9 nucleotidesPS417_03720 and PS417_03725 are separated by 177 nucleotides PS417_03715: PS417_03715 - sulfate adenylyltransferase subunit 2, at 840,870 to 841,787 _03715 PS417_03720: PS417_03720 - adenylylsulfate kinase, at 841,797 to 843,695 _03720 PS417_03725: PS417_03725 - acyltransferase, at 843,873 to 844,772 _03725 Position (kb) 841 842 843 844Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 840.807 kb on + strandat 840.807 kb on + strandat 840.808 kb on - strandat 840.808 kb on - strandat 840.845 kb on + strandat 840.845 kb on + strandat 840.845 kb on + strandat 840.845 kb on + strandat 843.818 kb on + strandat 843.818 kb on + strandat 843.818 kb on + strandat 843.819 kb on - strandat 843.985 kb on + strand, within PS417_03725at 844.062 kb on + strand, within PS417_03725at 844.252 kb on - strand, within PS417_03725at 844.465 kb on + strand, within PS417_03725at 844.517 kb on - strand, within PS417_03725at 844.517 kb on - strand, within PS417_03725at 844.529 kb on - strand, within PS417_03725

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
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840,807 + -0.1
840,807 + +0.1
840,808 - +0.7
840,808 - +0.3
840,845 + +0.6
840,845 + -0.6
840,845 + +0.6
840,845 + -0.1
843,818 + -0.4
843,818 + +0.4
843,818 + +0.0
843,819 - +1.2
843,985 + PS417_03725 0.12 -0.0
844,062 + PS417_03725 0.21 -0.6
844,252 - PS417_03725 0.42 -1.7
844,465 + PS417_03725 0.66 +5.8
844,517 - PS417_03725 0.72 -0.1
844,517 - PS417_03725 0.72 -0.1
844,529 - PS417_03725 0.73 +2.1

Or see this region's nucleotide sequence