Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25690 and PS417_25695 are separated by 61 nucleotides PS417_25695 and PS417_25700 are separated by 247 nucleotides PS417_25700 and PS417_25705 overlap by 4 nucleotides PS417_25705 and PS417_25710 are separated by 161 nucleotides
PS417_25690: PS417_25690 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,547,865 to 5,548,512
_25690
PS417_25695: PS417_25695 - peroxiredoxin, at 5,548,574 to 5,548,996
_25695
PS417_25700: PS417_25700 - cyclic AMP receptor protein, at 5,549,244 to 5,549,888
_25700
PS417_25705: PS417_25705 - lipoate--protein ligase, at 5,549,885 to 5,550,580
_25705
PS417_25710: PS417_25710 - indole-3-glycerol-phosphate synthase, at 5,550,742 to 5,551,578
_25710
Position (kb) 5549
5550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 5548.597 kb on - strand at 5548.651 kb on - strand, within PS417_25695 at 5548.651 kb on - strand, within PS417_25695 at 5548.742 kb on + strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5549.034 kb on - strand at 5549.199 kb on + strand at 5549.215 kb on - strand at 5549.215 kb on - strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.553 kb on + strand, within PS417_25700 at 5549.554 kb on - strand, within PS417_25700 at 5549.554 kb on - strand, within PS417_25700 at 5549.598 kb on + strand, within PS417_25700 at 5549.926 kb on + strand at 5550.092 kb on + strand, within PS417_25705 at 5550.251 kb on + strand, within PS417_25705 at 5550.310 kb on - strand, within PS417_25705 at 5550.589 kb on + strand at 5550.589 kb on + strand at 5550.589 kb on + strand at 5550.590 kb on - strand at 5550.590 kb on - strand at 5550.590 kb on - strand at 5550.593 kb on + strand at 5550.602 kb on - strand at 5550.673 kb on + strand at 5550.674 kb on - strand at 5550.674 kb on - strand at 5550.702 kb on + strand at 5550.709 kb on - strand at 5550.715 kb on + strand at 5550.716 kb on - strand at 5550.738 kb on + strand at 5550.748 kb on + strand at 5550.854 kb on + strand, within PS417_25710 at 5550.854 kb on + strand, within PS417_25710
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 5,548,597 - -0.2 5,548,651 - PS417_25695 0.18 -0.2 5,548,651 - PS417_25695 0.18 -0.5 5,548,742 + PS417_25695 0.40 +0.4 5,548,743 - PS417_25695 0.40 +0.9 5,548,743 - PS417_25695 0.40 -0.1 5,549,034 - +0.8 5,549,199 + -1.0 5,549,215 - +0.8 5,549,215 - -0.0 5,549,237 + -0.1 5,549,237 + +1.2 5,549,237 + +1.5 5,549,553 + PS417_25700 0.48 -1.8 5,549,554 - PS417_25700 0.48 -3.3 5,549,554 - PS417_25700 0.48 -1.4 5,549,598 + PS417_25700 0.55 -2.0 5,549,926 + -0.5 5,550,092 + PS417_25705 0.30 -0.0 5,550,251 + PS417_25705 0.53 +0.1 5,550,310 - PS417_25705 0.61 -0.3 5,550,589 + -0.8 5,550,589 + +0.0 5,550,589 + -0.9 5,550,590 - +0.0 5,550,590 - -0.1 5,550,590 - -0.3 5,550,593 + +7.2 5,550,602 - -0.4 5,550,673 + +0.9 5,550,674 - -1.6 5,550,674 - -0.9 5,550,702 + -0.8 5,550,709 - -0.3 5,550,715 + -0.8 5,550,716 - -0.6 5,550,738 + -0.1 5,550,748 + +1.2 5,550,854 + PS417_25710 0.13 -1.9 5,550,854 + PS417_25710 0.13 +1.2
Or see this region's nucleotide sequence