Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24060 and PS417_24065 are separated by 102 nucleotides PS417_24065 and PS417_24070 are separated by 254 nucleotides PS417_24070 and PS417_24075 are separated by 86 nucleotides PS417_24075 and PS417_24080 are separated by 98 nucleotides
PS417_24060: PS417_24060 - molecular chaperone DnaK, at 5,209,919 to 5,211,841
_24060
PS417_24065: PS417_24065 - heat shock protein GrpE, at 5,211,944 to 5,212,507
_24065
PS417_24070: PS417_24070 - recombination and repair protein, at 5,212,762 to 5,214,435
_24070
PS417_24075: PS417_24075 - Fur family transcriptional regulator, at 5,214,522 to 5,214,926
_24075
PS417_24080: PS417_24080 - membrane protein, at 5,215,025 to 5,215,552
_24080
Position (kb) 5212
5213
5214
5215 Strain fitness (log2 ratio) -2
-1
0
1 at 5212.725 kb on + strand at 5212.781 kb on + strand at 5212.785 kb on + strand at 5212.786 kb on - strand at 5212.789 kb on + strand at 5212.790 kb on - strand at 5212.839 kb on - strand at 5213.020 kb on - strand, within PS417_24070 at 5213.113 kb on - strand, within PS417_24070 at 5213.206 kb on + strand, within PS417_24070 at 5213.680 kb on - strand, within PS417_24070 at 5213.686 kb on + strand, within PS417_24070 at 5213.788 kb on - strand, within PS417_24070 at 5213.788 kb on - strand, within PS417_24070 at 5214.005 kb on + strand, within PS417_24070 at 5214.102 kb on + strand, within PS417_24070 at 5214.102 kb on + strand, within PS417_24070 at 5214.103 kb on - strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.210 kb on + strand, within PS417_24070 at 5214.211 kb on - strand, within PS417_24070 at 5214.221 kb on + strand, within PS417_24070 at 5214.221 kb on + strand, within PS417_24070 at 5214.222 kb on - strand, within PS417_24070 at 5214.443 kb on - strand at 5214.443 kb on - strand at 5214.454 kb on + strand at 5214.455 kb on - strand at 5214.456 kb on + strand at 5214.456 kb on + strand at 5214.456 kb on + strand at 5214.457 kb on - strand at 5214.457 kb on - strand at 5214.477 kb on + strand at 5214.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 5,212,725 + -0.1 5,212,781 + +0.0 5,212,785 + -0.2 5,212,786 - +0.5 5,212,789 + -1.3 5,212,790 - -0.3 5,212,839 - +1.0 5,213,020 - PS417_24070 0.15 -0.4 5,213,113 - PS417_24070 0.21 +0.6 5,213,206 + PS417_24070 0.27 -0.6 5,213,680 - PS417_24070 0.55 -0.8 5,213,686 + PS417_24070 0.55 +0.4 5,213,788 - PS417_24070 0.61 -0.7 5,213,788 - PS417_24070 0.61 -0.5 5,214,005 + PS417_24070 0.74 -1.6 5,214,102 + PS417_24070 0.80 -1.6 5,214,102 + PS417_24070 0.80 -1.1 5,214,103 - PS417_24070 0.80 -1.8 5,214,210 + PS417_24070 0.86 -0.3 5,214,210 + PS417_24070 0.86 +0.1 5,214,210 + PS417_24070 0.86 -0.7 5,214,211 - PS417_24070 0.87 -1.1 5,214,221 + PS417_24070 0.87 -0.1 5,214,221 + PS417_24070 0.87 -0.8 5,214,222 - PS417_24070 0.87 +1.1 5,214,443 - -0.6 5,214,443 - -0.2 5,214,454 + +0.9 5,214,455 - -2.3 5,214,456 + -0.0 5,214,456 + -0.6 5,214,456 + -0.1 5,214,457 - -0.7 5,214,457 - -0.0 5,214,477 + -0.2 5,214,478 - -0.5
Or see this region's nucleotide sequence