Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01755 and PS417_01760 are separated by 15 nucleotides PS417_01760 and PS417_01765 are separated by 12 nucleotides PS417_01765 and PS417_01770 are separated by 129 nucleotides
PS417_01755: PS417_01755 - proline-specific permease, at 390,179 to 391,588
_01755
PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809
_01760
PS417_01765: PS417_01765 - N-formylglutamate amidohydrolase, at 392,822 to 393,622
_01765
PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687
_01770
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.955 kb on + strand, within PS417_01755 at 390.956 kb on - strand, within PS417_01755 at 390.960 kb on - strand, within PS417_01755 at 391.115 kb on + strand, within PS417_01755 at 391.116 kb on - strand, within PS417_01755 at 391.656 kb on - strand at 391.732 kb on + strand, within PS417_01760 at 391.733 kb on - strand at 391.733 kb on - strand, within PS417_01760 at 391.866 kb on - strand, within PS417_01760 at 391.998 kb on + strand at 392.098 kb on + strand, within PS417_01760 at 392.098 kb on + strand, within PS417_01760 at 392.153 kb on + strand, within PS417_01760 at 392.460 kb on - strand, within PS417_01760 at 392.747 kb on + strand at 392.817 kb on + strand at 392.817 kb on + strand at 392.817 kb on + strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 393.687 kb on - strand at 393.721 kb on + strand at 393.722 kb on - strand at 393.726 kb on + strand at 393.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 390,927 - PS417_01755 0.53 +1.5 390,927 - PS417_01755 0.53 +0.1 390,927 - PS417_01755 0.53 -1.5 390,955 + PS417_01755 0.55 -0.4 390,956 - PS417_01755 0.55 +0.4 390,960 - PS417_01755 0.55 -0.6 391,115 + PS417_01755 0.66 -0.7 391,116 - PS417_01755 0.66 -0.1 391,656 - -0.7 391,732 + PS417_01760 0.11 -0.6 391,733 - +1.1 391,733 - PS417_01760 0.11 -0.2 391,866 - PS417_01760 0.22 -1.8 391,998 + +0.4 392,098 + PS417_01760 0.41 -0.2 392,098 + PS417_01760 0.41 -0.4 392,153 + PS417_01760 0.46 -1.8 392,460 - PS417_01760 0.71 -0.0 392,747 + -0.6 392,817 + -1.9 392,817 + -0.3 392,817 + -0.3 392,818 - +1.6 392,818 - -3.0 392,818 - +0.2 392,818 - +1.2 393,687 - +0.6 393,721 + +0.8 393,722 - -0.1 393,726 + -0.2 393,726 + +0.1
Or see this region's nucleotide sequence